tRNA/fragment and flanking sequence:

tRNA
5393301 gtcctgatcc ggtaccctgt ggaccgagcg cccaccagga cgcccaccca cGCCTTCGTA
5393361 GCTCAGGGGA TAGAGCACCG CTCTCCTAAA GCGGGTGTCG CAGGTTCGAA TCCTGCCGGG
5393421 GGCACCAggg cgaaggccac ctaccgatct tggtaggtgg cctttgacat ccatgtct

tDNA Fragment
5400680 ggcggcctca caccccgagc gtctgaggcc catgagacca ggtggatcga aCTCtTAAAG
5400740 CGGGTGTCGC AGGTTCGAAT CCTGCCGGGG GCACaacgcg ttaccgctct gacctggggt
5400800 ttctccccca gggagggcgc ctact

tRNA gene (GREEN CAPS): 5393352..5393427
Displaced gene fragment (GREEN, mismatches lowercase): 5400731..5400773
Match (underlined) extends 3-prime beyond tDNA: 0 bp
Index point: nt 35
Mismatches: 3
Damage within repeat (Red): none
Junction: anticodon attachment site
Supplemental Island Information
Island Length: 7348 bp
Mononucleotide (difference to replicon): 1.44
Dinucleotide bias (between genome and island): 0.06
Minimum distance between integrase and endpoint: 3.26
Density of hypothetical proteins (fold over replicon): 0.38
Housekeeping index: -10.93

Potential integrases in NC_017765
53951095396371Integrase in the opposite orientation as tDNA
57258295727202
58268305828170
62680756269430
70038787004351
73127537313250
73185817320107
90073159008676
99310309932322
99316839932243
99320999934741

Potential fragments for tRNA-Arg(CCT)
18364891836507
29901112990094
49516334951605
54007735400731
59622865962304


Genes: 1
LeftRightStrandAnnotation
53951095396176-ID=386840769; acc=YP_006245827.1; Name=phage integrase;

Sequence:     

>Streptomyces hygroscopicus subsp. jinggangensis 5008|5393287-5400835|100bp flanks
gcatccagcaggacctccacaccgcatcccgcttcacccacgtccccccgtcctgatccggtaccctgtggaccgagcgcccaccaggacgcccacccacGCCTTCGTAGCTCAGGGGATAGAGCACCGCTCTCCTAAAGCGGGTGTCGCAGGTTCGAATCCTGCCGGGGGCACCAGGGCGAAGGCCACCTACCGATCTTGGTAGGTGGCCTTTGACATCCATGTCTGACATCAACGGCGGCGATCACTTACGACCGGGGATCCTCCCCTGGGCCGACTCATGCGACTCATGCGGCGCGCTGGAGGCGCCGCCGAGGAGACTCCACAGCAACGTCACGCTGATTCGGCCGTGACAGTCTCAGGCCCAAGAACCGTGGCGAACGGCACGTCGAGACCGTCATGCCATCCAAGCGGCACGAAACTGGTCTCGCAGGAAGGCGTCAGTCGCGTTCAAGGTCACCCCTTCGGCTGTCTCCGTGGCGGGCCGGACGCACGGACCTGGGCCGTGTCTGACTCAAGTACCTCCTCAGCCTCGGCGTCAACTGGAGCCCGCTGCTGATGCGCGTACACGATGCGCAGCTTGCCTGCAGCGGTTGGAACAGTACTTTCTGGGTCGCCCGGGACGGCCGGCCCGGCCAGCTGTGAGGCTCGCGTCAGGCTTCTGGCAGTGGGCACATGGGGCAGCGGCGATCAACTGATGTAGTCCTAGCCGCGTGAGTAGATCTCGGATCTCCGCAGTCTCTGCCGCATGACCCTCGGTGTCCGCGGCCAACGCCTCGCGGACTTCCTGGAGGAGGGTTGGATCCCCAAGGCGATTGACCAAGCTGCGCCGGATCATGGCGACCCCCTCCCGGTACCCTCCACGACCAACCAGCTGTGCAAGTTGGCGCCGAGAGAGCCCACAGATGACGTATCCCAAGAGGATGGTCTGCTGCTCTTGACTCAGCTCCAAGGACTGCAGCACGGCCACGAGCTGCTCGCCTAGCGATTGCTCAGCAGCCTCCCGTAAGGCAGCGTCACCGGTGGGGTCTTGATACTGACGACGGCGGTTCATGAAGAGCCCTCCGAGGCACTCGATGGCTGCTGCGCACCCACGGGCCCGTCGACGTCCGCCGGTGCACCCTCTACTTGGAGGGTGGAGGTGTGCGCCGTTGTGCTGGTCACGCTGCTTGTCGCCGAAACCCGACCCCTGGACCAGGGTAGTAGCGCAGACAAAGCCAGAATGATGTTGCTGATGCCGTTCAGGACCTGGGGAAGGTCTGCCGCATGAGCCTTGCGGACGATCACCAACACGATCAACAGCGCAACGATGAGCGTGGTGCTCAGCAACGCGGCGCCAAGCAGCAAAGGGGAGTGCAGCGAGGGCAAGGCTTCAGAGGGCATAGGAACCAATTCAGACTCTCCTCGGGAACGCAAAAAGCCCCCGCGAGTGCGGGGGCTTTCGTATCGGGCGCGAGGCTGTGAAACAAAAAAATCCCGTCATCTGTGAGGACGGGATTTGTGTGGGCACACCACTGCGCACGAGGAGCCTGACAGAGACAGCGCTTCATCGTCAAGCACGACTACACCACGCGACAAAATGCCAGGTCAGAGCCTCACTAACACAGGAAATGGCTCTTCCAGCCAAATCCGTAACGCACGCAGTCACGCTCCCGTGTGGCCGGGCGACGGTAGGCTGTCGGGCAGCCAAGTGAGCTGGTCTCGAAGCAGTGTTTCTGGGCTAAAGCTGTCTTCGCTGATCATCCGCCCACACATGTCGCGCCCTACGAGGCCGTGCGTCTGAGCCTCGGCAGGCACGAGCGGAAGAAGCCCCCAACCTGAAAGGGCCAGGGGCTTCACAGCAGACGTCGAAGGCGGTCACTCACGGCCGGGGCGCCTTCTCAGCAGCCGGTCCATGTGGCTCATGGCCTCGCGCTGGGTGTCCTGGACGGCGCGGGTGTAAACGTCCATGGTGATACTGATCTGGGAATGACCCAGGATCTCCATCACCACGCGGGGCGCAACGCCGGCCGCGGTGAGGAGGGTGACCGTGCCGTGGCGTGCGTCGTGCAGCCGGATCACGCGGAGGCCAGCGGACTGGGCGACGCGGGTGAAGGAGCGGTAGACGTTCCGCCGCTCGACCGGGCGACCGGTGCGGGTGGTGAAGACGTAATCCGACTCACGCCAGGTCTCCCCCGCCTTGGCCCGAGCTGCCGTCTGCCGCATGCGATGCCAGCGCAGGGGCGCGATGCAGAGGGCGGGCAGCGGGACGGCACGGCGACGGCGGCTCTTGGGGTCGTCGTCGTACAGGACGCCACGGCGACGCTGGACCTGGTGACGGACGTAGAGGACTCGGTTATCGAGGTCGACGTCCGACCAGCGCAGACCGACGATCTCTCCGCGGCGGAGACCCATGGCGATGGCAAGCACGAAGGCCGCGTAGAGGGGGTCCTTGCGCGAGGCGGCGAGGAAGTCGAGCGTCTCGTCCAGGGTCCAGGGGTGCAGCTCGGGTGAGTCTGTGCGAGGCGGCTCTACGAGCTTGGCGACGTTGCGCGTGATCAGTTCTTCGCGGCACGCGGAGGACAGCGCAGAGCGCAGAACTCGGTGTGATTCCTTGGCGGTTGCTGCGGTGGTTTCCCTCTCCAGGCGTACGAGGAACCGGCGGACGTCGGCGACGCCGAGCGATTCGAGACGCTTGGTACCGAGGAGCGGCACCAGGTAGAGGCGGACGTGTGCCTCGTACTTGTCGAAGGTACTGAGCTTCCGTCGGGGCTTGATGACGTTGTCCAACCAGTACGGCAGCCACTCGGCGAGCTTGGCCGACTTGGTGGGCACGGGCACGCCCTGGTCGACCTTGTCGAGCAGTTCGCGACGCTTGGCGTCGCACTCTGCCCAGGTCTTGCCGTAGGCGAACTTGCGGGCGCGAGTGCCGTCCGGCTGGAGCACGTAGACCGCGCACTGGAACCGGCCGTCCTTGCGCTTGGTGATGATGCCGGCGCCGTTGGGGTTGCGCTTGCGTTGCTGGGCCCTCAGGCGGCCGCCTCCAGTTCGGTGGTGATGTACTCGCGGACAGCCCGCACCGGGATACGGCGGCACCGGCCGATGGTGATCGAGGGCAGACGCCGGGAGCGGATGAGGTCATAGACCGTGGAGCGGCCGAGCTTGAGACGTGCCTTGACGTCCGGGACCGTCAGCAGCTCGTCGTCATGAGCTGGCGGCCGAAGGTGAAGGTATGGGCGCGGCCGTCGATGACCGGGCCGTCGACGCGGACCTTGGCAGCAGCGGCCTCGATGGCGTCGGTGAGGAGTTCGGCCGTTGCCCAGGACGAAGGCGGGGTGTCTCCGCCGCCGGGGGCCGTCGAGACGGATGACCGCGGCCCCGCGAGACAGACTGAGTTACAACTTTCTCTACTGGTTCAAGGCGGCTCGCTCCGCTCACCGCGCGCGGCCCGGCCCCCGGCCGGGCCTGCGCTCCTGTCTCCGCCCCGCTCCAGCCCGGCCGGCGCCCGTGCCCCGCACTGAGCAGTCAGCCGCCTGACGGCAGAGAAGGGGTACGTCGTGGCTGGGGCGGTCGGCTCCGCGGCTTTAGGCAGCCGCTTTGGCGCGAGCCTCGAAGATCATGGCCCCGACGTCGTGCTTTACCGGCCAGGTCCACAGACTGCCCGACGCGCCGCAAGCTTACGGGGCCATGATCACTCGCGCCAAAGCAGCTCCAGCCCAAAGCCGCTCCACCGACCTACAGTAGGCACTACGGGCAAAAGCCCTCATCCGCCCAGCGCTCTCTTAAGGCCAGTCATCTTGAGCCAATCCGTCAATCTTTCCCTAGCCTCAACCATCTTCGCTAGATCATTCCCATCTACAGCGAAAATGATTCCACCTGTTTCCTGAAACCTTCTCAAGTGTTCAATGAATGGCTTAGTGAAGCCTGACAGGGATACGAAAATGCCGATCCGACACAAGGCACCTCTGTCGCGCATCTTGGACTCCAGGACTCGCAATTCAGACACGCCTACCTTGTCCCTCCAGTTCTTACATTCGACCAAGATCAATGGGCTCCTTTGGGCAACCCAGAAAGGATCAGAAAGACTATTACTCAGAACAATATCTATCTCTTCTTCGGTGGTCCTGAAATTTTTCTCAATCACTGTCAGCTCTGCACCTTCAGCGCGCACCAGGGCCTCTACCAAGGATTCAAGGGCATCACCGCGCGACTTCGTCGTATGGGCGCTCGCGTCTGCGTTGAGGTTCAGGAGTTGCCTAAGAAGATCAGCTGATCGGGCAGCCCAAAATTCTGTGCTCAGTGCGCCATCGAAAGAGGACAGGACCCCGAACAGGCGCGCAAGTGACTGTGCAGTGCCTGCAAGCGCCTTGCTGGAATCTTGCCAGTATTGCGCCGCGTAAGCGCGAGCATCTTCCTCGCTGCTTGCCATGGAAAAATCGGCGGCGTCATCGGAGAGGTCGAGCTCAATAAGTTCATTGAGGGGCAGGGAACGCAGAAAGACGCAAATAATTAGAGGCCATGCAAGAAGGGGGGCGTCTCGCTGCAGGTGAATCAGCGACTCCACGGCGCGAAGGATCTCATACTTTCCCTCGACACCGTATTTCATCGCCGCCTTATAGGCTTCGAACGCATCGATAAAAGGGTGCGGTGACTGCTCCTCATTGATAAGTGATTCCAGTAGAACAATATCTGCTTCTTCTTCATCTTCCGACTGCAGCTTCATCAGTTCCCCTAGGCGGAGAAGATCAAGCTCTGCTGGCCGCCGCATGAATTCATCCAGTTCTACCTTGAGTCGCTCCCAGCCCAGCCCATCGAACCGACGATCTCCCATGTATGCACCGGTAGCTTGTCCATGCTCTACGCGGATAGCCGCGTATGCTGAAACGGCTGCGTTCCAACCGAGTCCAGTTTTGGCGAGCGTTTCAAGAACCTGGCCTACCGTCGCCGAAAACTTGACTGAGTAGCTCTGCTCTCCTTCTTCCGCATCCTCCACTGTCACGTGAAGTTGGTCGTATTCAAAAAGCATACGAGGGAGCTCGTTGGCGTGCTTGCGCCACATGAAGGTGCACCTATCTCCGATCTGCAAAGAAGTGTCGTATCCCATAACTAACTCCCTATCCGAAGCGTACTAGATCACGTCGATTCTGGCCCACCGCAATGTCCGAGCATGTGCGCGCTAAACCGCAACTGGCTTACATATTGGGTTCTAGCTGCTTTTTCTTGCGGTCGCGAGCGAACCCGACGAAACTAACAATCAGGAATTTCACTCCGAACGATGGCACCAAGATCCCTGCATAAATCCAAAAGGTACCCCCACCACCCACTATCTCCGTCGGGGTCCATTATTGGAATCCAAAGAAAGTTGCTCGCGATGATAGTGAGCCAGCGCCCCGTCTCTCGTGGGACTCGACCGGCCCTGAATTCGAAAAATATGGTAAGCGCCATGAACAGCATGAAGTGATAGAGGCTGAGCACCCAGACGACGGGGTGCACCCAGTCTGCGGACCCTTCAACGAAGCTGATCTGCCGAGGCCACTCCCACAGCATGATGACAACTAGAGCTTGGATGGGGAGGGATCGAATTAGATCCTTGCGAAACACACGGAGACGTTCCTCGTGCCGAAGCGCAAAGTCGGCAAGTTCCTCAAATAGTGGATTGGGTGCCGTCTCGGGATCTAGCCCATGCCTGGCTCGAACAGCTTCGGTTAGCGCCTCTTCCTGGTTCGCTGCGCGAATGCGCATCCTGGCATCCCCAGCATAGGCCGCGACCTCTGCATAAAAGGTATCAATCATGTCAGAGTTAAGGCGCGAGGTGTTGGCTACTTGAACCCACCTGGGGCTTTCATCGACGGACCGTAACTGTTCAGCCAGGTTCACCCAGAACAGTTCCTTCTTTTTCATGTCGTAAACGACGCCGATGATAGGGATGCGACTCTGCCGCCAGTCATCGAAATGGTCGTCTATGGGAATCGCATACCCATTGACCCTTTTATACCTCTTGCCACTCTTCACCTGGATGGCAATCCAGTAAGGCGTCCTCTTGCTGTCGCGCGTGAAGTTAACGATCATATCCTCGCCGTGATCGTTCCCTCCGTCGATCTCCTGAACGAGGTGATCGTGTTCCTCAAGTAGTGAACGCAGAGCGTTGACGCCCGCCCTCTCGATCTTGCGACTGGCATGAACAGTTGACACCCAGCCCCCCTGAAGTGAGTCTTCGCCAGACTAGCGGCAAGCCCCGAGAACCGGGACTGGTCGCGGTCGCCCACTCATGCACTGACCTGGTCGGTTCCATGCCGCCCGTTGTCCTGTTCTTTGTCCAGCGCGCCGCCGGCCGCCACCGTTCATCGCCATACGCGCGCCCCTCCTGACCTGCCCGGCTAACCCTCCGGGGCGGCCTCCGTCATGGGCGTCGCCTACCGGCACGACGTACACGACCATCAGGTGAGGGGCCGGCTCGATGTGTGCAGGCGGATGTCGAGTGATCATCCCTGGGCCGTCTCTGGGCCGTGCGAGGGCGCCCGAGGCGACCAACGGCGACCGCCAGTGACAGACGAAGCGCAGCCCGCAGCCGCGAAGCCCCAGGTCAGTGGCCTTGCGCCTAACGCGTTTCCGTCTAGAGGTGGCGGTACGGCAAGTCTCGCAAACGCGCCCAACCTGATCCCCTGGGCAACTACGGTGCTCACAACATCCACAGACCGAACGGGAGCAGCAGTGCACGTAGGCCCGGCGCATTTCACAGTGAAACTCTTGGACCAACTCGATGCCGAGCCCAGTGAGGTCTGGATCTTGGACGTCGAGAGCCTTGCAATGACGTCTGACGAGGTCGTCAAAGAGCTGCAGGACCTGACTTGGCGCCCCGGAGCGCGTTACCCGCTCATGAGCCACATCAGCGCGCGGCAAGGCATCTTGAACTGGGGCGCTTCGTCATCGCTCTCTCAGTTCCTGTTGGAGATGAGCGCTGGTGGACTCGGTGGCATAGAGGCCGCAGGCATCGCGGCAGCGATCCGCTACACCTACGGCAAGTTTCGCGACCGATCCCAGGGTGACCCTTGGGGCGAGTCCATCTCTGAGGACGTAGCTCTAGCTCAGGCGAAGGCTCGGATCGTTGAGCACTATGGGGTCGCTGAGGACGCTCTCTCCGTACAACGGGCAGAGACCAACGCTGCAGACAAGCGCTTTGAGTTCACGTTCGCTCATACAGATGGGAGATCGTTCGGCGCCGAGGTCGGGGTGATCAAGGACTCCCCCACATGCATGCGTCTCTGGCGGGAAGCTCCGCGCACGTGACGTCTGGCTCGATTGCGGCGCTGCAATACGAGGACGCTCAGCGTGTCGTCCCGTAGGTGATCGAGGAGTTGACGCGGATCTCTCAGACACCGGTGAGCTTCCGTCCTGACATCCACATCTGACATCAACGGCGACAGCCAGCAGGAGGTCTGGGCAACCCGCGGCGGCCTCACACCCCGAGCGTCTGAGGCCCATGAGACCAGGTGGATCGAACTCTTAAAGCGGGTGTCGCAGGTTCGAATCCTGCCGGGGGCACaacgcgttaccgctctgacctggggtttctcccccagggagggcgcctactcggcctcgggctcctcgtccggggccgtttgcgtgagcgggcgtgcgtc