tRNA/fragment and flanking sequence:

tRNA
5591848 gtgacccggc tcggcggcga tctcggcggg cgggtaccat gagccgagca cGGCCAGGTA
5591788 GCTCAGTTGG TACGAGCGTC CGACTGAAAA TCGGAAGGTC GGCGGTTCGA CCCCGCCCCT
5591728 GGCCACATag cctttcgccg ggctatgcag atccccacca gcggaaacgt cggtgggga

tDNA Fragment
5586948 gttgatcgca cgcggcttgc gctcaagccc actgagctgg gcatttgtct aCGACTGAAA
5586888 ATCGGAAGGT CGGCGGTTCG ACCtCGCCCC TGGCCACtta tcctttcgcc gggctacgca
5586828 gatccccacc agcggaaacg tcagtggg

tRNA gene (GREEN CAPS): 5591721..5591797
Displaced gene fragment (GREEN, mismatches lowercase): 5586852..5586897
Match (underlined) extends 3-prime beyond tDNA: 0 bp
Index point: nt 36
Mismatches: 32
Damage within repeat (Red): none
Junction: anticodon attachment site
Supplemental Island Information
Island Length: 4826 bp
Mononucleotide (difference to replicon): 1.39
Dinucleotide bias (between genome and island): 0.07
Minimum distance between integrase and endpoint: 2.78
Density of hypothetical proteins (fold over replicon): 0.05
Housekeeping index: -3.49

Potential integrases in NC_009953
14926501492955
17340541734650
17975591799109
18107871812028
18167041817261
22184152219857
22979402298725
28330512834178
28497132851674
41192144120209
42512214252141
42855314287309
43206574322435
44776864478636
50048495005772
55874035587906Integrase in the same orientation as tDNA
56521045652727

Potential fragments for tRNA-Phe(GAA)
10865831086606
13337961333819
14470651447083
16605091660539
43268914326915
43863764386394
55802505580294
55868525586897


Genes: 5
LeftRightStrandAnnotation
55869755587190-ID=159040407; acc=YP_001539660.1; Name=hypothetical protein Sare_4921;
55872195587389-ID=159040408; acc=YP_001539661.1; Name=hypothetical protein Sare_4922;
55886485588797-ID=159040409; acc=YP_001539662.1; Name=hypothetical protein Sare_4924;
55890135589801-ID=159040410; acc=YP_001539663.1; Name=transposase;
55898015591027-ID=159040411; acc=YP_001539664.1; Name=integrase catalytic protein;

Sequence:     

>Salinispora arenicola CNS-205|5591823-5586797|100bp flanks
ccggtgaaggccgcgccaccatgcgcggccttcaccatatcggctacatgtgacccggctcggcggcgatctcggcgggcgggtaccatgagccgagcacGGCCAGGTAGCTCAGTTGGTACGAGCGTCCGACTGAAAATCGGAAGGTCGGCGGTTCGACCCCGCCCCTGGCCACATAGCCTTTCGCCGGGCTATGCAGATCCCCACCAGCGGAAACGTCGGTGGGGATCTTTTGTTCCGGGCGTTGCCTGGTAGCCCTGAGGACGGCCGTGGTTGACCCCATGGGGCCACGGTTGGCCGTCCCTTATCGCATGTAGATCGCACGCTCAGTGACCGGCGGCTAGGCCGAGTGCGCGGCCCGGCGGCGGGCCGAAGGCCCGCCCTTAACCAAGCCGCACATACCACGCTTCAGCCACATGTCGGGTCTCGGAATCTCTGTGACAGATCGCTATCAGGACCTGCGTGACACCCCCGAGTGCCGCCCGCCTGACACCCCGGCAGAATGTCATGACGCCGAGCGCCAGCTATTGCGCCGACAGCGGAGGGGCCTCATGACTTACGACCTCGAGTGGGCTGATCTACCCGAACCTGCTGCCACTGCTCGCTCGCGCTACGAAACCTGCACTGATCTTGAGTATCTGTGCGTGCACGCTCCTCCATGCCTGGACGAGTACTCAACGCTTGCGGCTGCCTACCAGTTCCATCTGAACATTTCGGGCATGGGCTTCTGCCGCGGTGGTATGCGCCGAACGGGCATGATCTATCAAGCAACCGCGCAGCCCTTCCCTGACTGGCATTTCTGTCGGCTCCGCCTGAAAACTGACCCTGTGGTTCCGGCTGAATTTTGACCCCTTCCGAAAGCATCGGGAGGTGCTGAGCGTGGAGGACTGGGCGGAGATCCGTCGGTTGCACCGGGCGGAGCGGATGGCGATCAAGGCCATCTGTCGTCGGCTGGGGGTCTCGCGGAACACGGTGCGTAAGGCCTTGGCCAGTCATGAGCCGCCCCGCTATCAGCGGGCGGCGAAGGGCTCGATCGTGGATGCGGTCGAGCCGCAGATCAGGGTGTTGTTGGCGGAGTTCCCGGACATGCCGACGACGGTGATTATGGAGCGGGTCGGGTGGACCCGCGGCAAGACGGTGTTCGCCGATCGGGTGCAGCAGTTGCGGCCGTTGTTCCGTCGGCCCGACCCGAGCCAGCGGACGGAGTATCTGCCGGGTGAGTTGGCGCAGTGTGATCTGTGGTTCCCGCCGGCGGACGTGCCGTTGGGGTTCGGGCAGGTCGGTCGGCCGCCGGTGCTGGTGATGGTGTCGGGGTATTCGCGGTGGCTGTCGGCGGTGATGATCCCGTCGCGGCAGTCACCGGATCTGCTGGTCGGGCACTGGAGGCTGATCTCCGGCTGGAGGCGGGTGCCCAAGGCGTTGGTGTGGGACAACGAGTCCGCGGTTGGGCAGTGGCGGGCCGGGCGGCCGCAGCTGACCGAGGCGATGAACGCCTTCCGCGGCACTCTCGGCATCAAGGTGATTCAGTGTCGGCCGGCAGACCCGGAGGCCAAGGGCCTGGTCGAGCGGGCCAACGGCTATCTGGAAACCTCGTTCCTGCCCGGACGCCGCTTCGCCTCACCCGGCGACTTCAATGCCCAGCTGTCCGAGTGGTTGGTGCGGGCGAACAACCGGCAGCACCGGGTACTGGGCTGCCGGCCAGCCGAACGATGGGACGCCGACCGGCAAGCGATGCTGCCGCTGCCGCCGGTCGCACCGGTGGTCGGCTGGCGGCAGGCCACCCGACTGCCCCGCGATCACTACGTGCGCATGGACGGCAACGACTACTCGGTGCACCCGTCGGTGGTTGGCCGGCGGGTCGAGGTCACCGCCGACGGCGACCAGGTGACGGTGCTCTGCGACGGCCGATCCGTGGCCCGACACGATCGCTGCTGGGCGAAGCACCAGAGCATCACCGACACCGCCCACCGGCAAGCCGCCGCTGATCTGCGCGTCGCTGCCCAACGCACGCCCACGGCCGCCGTTGACGCCCAGGTCGAACGGCGTCCGTTGAGCGACTACGACCGCCTGTTCGGCCTGGATGAGGTGGCTGCGTGATGGCCACCAAGACCAGCCGCAACGTCTCATCGGAGATCGCGTTTCTCACCCGCGCACTGAAGGCGCCGTCCCTGGCCGCGTCGGTGGAACGCCTGGCGGAGCGGGCCCGAGCGGAGTCGTGGACGCATGAGGAGTTCCTCGCTGCCTGCCTGCAACGCGAAGTGGCTGCCCGGGAGTCTCATGGCGGAGAGGGACGCATCCGGGCAGCCAAGTTCCCGGCCCGCAAGAGCCTGGAGGAGTTCGACTTCGACCACCAGCGGTCCTTGAAGCGGGAGGCCATCGCCCACCTGGGCACCCTCGACTTCATCACCGGCCGGGAGAACGTGGTGTTCCTCGGCCCGCCGGGCACCGGCAAGACCCACCTGTCCATCGGCTTGGGCATCCGGGCCTGCCAGGCCGGACACCGGGTAGCGTTCGCCACCGCCGCCCAGTGGGTGTCTCGCCTCGCTGACGCCCACCACGCCGGCCGTCTGCAAGACGAACTGGTCAAGCTCGGTCGGATCCCGCTGCTGATCGTCGACGAGGTCGGCTACATCCCCTTCGAAGCCGAAGCGGCGAACCTGTTCTTCCAGCTCGTCTCTAACCGCTACGAACGAGCCTCGCTGATCGTCACCAGCAACAAGCCCTTCGGCCGCTGGGGCGAAGTGTTCGGCGACGACGTTGTCGCCGCAGCCATGATCGACCGGCTCGTCCACCACGCCGAGGTCGTCTCGATGAAGGGCGACAGCTACCGGCTCAAAGACCGCGACCTCGGCCGCGTTCCTGCGGCCACCAAGACCAACGACTGAACATCAACAACCAACGAGGGGGTCAAAATTCGGCCGGAACAGAGGGGTCAAATTTCAGCCGGCGTTGACAATTTCGACGAATCGATGACTGGCGATCAGCTGATCAGAGTCGACGCGATGCCTACAACGAGGCCGAACGGGCGGCCTCGGCCCAGACGGTCCCCGGATTGGTCGGTATCCCCGAATTCAAGCTGACGAGTAACGGACCCTGGTTGGTGGGGACGAGGGAAGTCGAGCAAGCGCTGGACTGCTACCAGGCGTCGTCACCGAGTCTGCGGGCAGAGCTGGAGAGGGATGACCTGTGGGTGGCCTGGCTTGACTGGCTGAGACTGACTGTCATGCATGGCGGCTTCACCGTCCGCTGACCCGCCCGCCATCCCTAGATCGTCTAGCCAGACATGTCACGCACGTCCAGAGACTGTTCTGTCATGCAGGTCCTGAGACCCGACACCATGCTTCGACCACATGTCCGGCCTCGGGACGTGATTGTCAAGATCAGTGATGGTAGTGGCCTCCGGACGGCAGTCATAGGCCCTTGAGGGCGCTCGTTATGCTGCACTCAGCCTTTGCGCCTTTACAAGTCGTAATACTTTGATCTTGTCGACCGAAGTGAACGAAAACAACATATTTGATCTTTAGGTCTGCAGGTCAGGAAGCCTGTTCCCCGCACACGCGGGGGTGATCCGTGCAGACGGTCAAGGTCAGCCGCGGCGACGACCTGTTCCCCGCACACGCGGGGGTGATCCCCATCACGCCGGCCGGGAATGCGCCGCTGGACACTGTTCCCCGCACACGCGGGGGTGATCCAGCCGGGCGGGGCACTGTCGTCATCGACCCGCACTGTTCCCCGCACACGCGGGGGTGATCCTGCCGCCACAACCACCACACCACGACCACCGCCCTGTTCCCCGCACACGCGGGGGTGATCCTCCCCGGTGGTGGATTCGGGTACGGGCGCTGACCTGTTCCCCGCACACGCGGGGGTGATCCCCCCGAAACCAGCAGGAGTAAACGCTCATACCTCTGTTCCCCGCACACGCGGGGGTGATCCCACCGGCTCCACAGAGCACTTGCAGTTGTCGTGCTGTTCCCCGCGCAAGCAGGGGTGATCCGACGAGGAGGCCGGCGTGGACCTTGACGTGGAGCTGTTCCCCGCGCACGCGGGGGTGAACCTGTCGCCGGCCTCGCACGCCATAGGATCTTTCCTGCTGACCCTTACGCACGGGAGTGATTCCAGTCCGGCGCCTTCGCCGCCGCCCGCAATACGTGCGCACAACACCTTAGAGGCCGGGCGGGAACGACTGTTCATCAGTCGAGACGGGTCGCCGCTGCGAGGTCACACCCTCTATCAGGCATTCGTGCGGGCCCGTAAAAGGGTCGGAATGGACAACCTGACGTTTCACGACCTTCGCCACACAGGGCAGACCCTGGCCGCGCAGACCGGCGCCACGCTGGCGGACCTCATGAAACGTCTCGGGCGCTCGTCCATGGCGGCGGCTCGCCGGTACCTTCACGCGGTCGACGGCCGCGACCAGGAGATCGCCAAGGCGCTGTCGGAGCCGGCGGCGCATGGAGACGTCGCACGTCTTGCCAAAACGAGCACAATGTAACGAAGGGTGTGGTATGCCGTTAAAAGTGCGGGATGTGATCAAGATGATCGAGGCGGAAAAATGGATGCTGGTCGCCACTCGCGGCAGTCACCGTCAGTACAAGCATCACAGCAAGCCGGGCCGGGTAACGATTCCCGGGAAACCGAGTCGCGACTTGCCGCCCGGGTTGGAGTCCAGCTCCTGAAGCAAGCGGGCTTGATGGGAGGTAACAAGTGAACGCATACGTCGTGATCATCGAGCGCGCCGAGGATGGTGGCTATGGTGCTTGGTCACCCGACCTTCCTGGCTGCGTAGCGCTCGGGGAGACCCGTAGGGAGGCTCTGGCCGAGATGCGTGCGGCCATCGCTTTTCACCTAGAGGGCCTGCGCGAGGCGGGCGAGCCGGTTCCGGCACCGAAAGCGGTCGGCGTTGATTTGATCGCCGCGTGACGCGCGCCGAGTGGTTGTAGTCGCACGTTGATCGCACGCGGCTTGCGCTCAAGCCCACTGAGCTGGGCATTTGTCTACGACTGAAAATCGGAAGGTCGGCGGTTCGACCTCGCCCCTGGCCACttatcctttcgccgggctacgcagatccccaccagcggaaacgtcagtggggatcttttgtcttccttaatcatcgatcctcccgcgtcggatatggccg