tRNA/fragment and flanking sequence:

tDNA Fragment
1174496 gcggtagggt tggtgcactg gatcgggtcc aagcgctaca ttcgccgtca aGCCtCCAcA
1174556 GCCCgATTGG CAGAGGCAGC GGACaatccg cgctcacggg tgctggcgtt tgctagtgcc
1174616 ggtaatcttc gaaag

tRNA
1180474 gacggaacag agtcgggctc ccggcatgag atagcgcgtc tgaactgcaa cGCCCCCATA
1180534 GCCCAATTGG CAGAGGCAGC GGACTTAAAA TCCGTCCAGT GTCGGTTCGA GTCCGACTGG
1180594 GGGCACCGaa actgtacgaa catatgcgct ggtgagcgca ttttttgtgt ttgctagat

tRNA gene (GREEN CAPS): 1180525..1180601
Displaced gene fragment (GREEN, mismatches lowercase): 1174547..1174579
Match (underlined) extends 5-prime beyond tDNA: 0 bp
Index point: nt 36
Mismatches: 3,7,13
Damage within repeat (Red): none
Junction: anticodon attachment site
Supplemental Island Information
Island Length: 6045 bp
Mononucleotide (difference to replicon): 1.31
Dinucleotide bias (between genome and island): 0.04
Minimum distance between integrase and endpoint: 2.28
Density of hypothetical proteins (fold over replicon): 0.17
Housekeeping index: -6.41

Potential integrases in NC_015848
11791411180502Integrase in the same orientation as tDNA
11806471181903
26389512639505
41457994147058
42675374267821

Potential fragments for tRNA-Leu(TAA)
11060271106006
11745791174547
11917831191759
21012282101206


Genes: 4
LeftRightStrandAnnotation
11758541176375+ID=340626052; acc=YP_004744504.1; Name=integrase catalytic subunit;
11772671178151-ID=340626053; acc=YP_004744505.1; Name=hypothetical protein MCAN_10481;
11781541179041-ID=340626054; acc=YP_004744506.1; Name=hypothetical protein MCAN_10491;
11792911180502+ID=340626055; acc=YP_004744507.1; Name=phage integrase family protein;

Sequence:     

>Mycobacterium canettii CIPT 140010059|1174447-1180692|100bp flanks
cggcgcgcggattctaggcgaatgacggctctttcgcacctggcgtgtcgcggtagggttggtgcactggatcgggtccaagcgctacattcgccgtcaaGCCTCCACAGCCCGATTGGCAGAGGCAGCGGACAATCCGCGCTCACGGGTGCTGGCGTTTGCTAGTGCCGGTAATCTTCGAAAGAGTCGCTTCTAACTGCCAATATGCCGGGTCGAAGCCACTGTCCAGCACTGTCGGCATCCAGATGGGGGCGTTGGCGCGGCTAGTCGGGATACCTGCGGCACCGGTCCAGCTGGCTGTCCGTGACGGCGTGCGCGGTACGCTGGTCAAGGACGTGCGGTTGCCGCAAGCATTGATGCCCGAGGTTGTGCTCAACTGCGACCGGGACGATCCCGGGCAACGTGGGCACAACGTCGAGGCGATCCAGCAGGCGCTTGCTCGGTTCGCAGCACCTGCCGACCCAGCGCTCCTACCCACGTTCCGCGCTTTCGACCTACCTCGTGTTCGACGCATTGATCGCCACGGTGATCGTCACGACCGCAACTGGGCGGTCCTTGCGCCGCCGCTGGGGACAAAGTATGTGGAGGCGCTGTGCCCATCGTTCGACCACGCGGCCAGCCTCGGGTTCACGCTGACCGACCAGACCCCCGCTCAGCATTTGCACGACGGGTGAGCTTCCCCTCTTGTTGTGGAGACATCGCGATGAGGAGGTTGGGCGATGGAGGCACGGCGGAAGTTCGATGTCCAGTTCAAGGAAGGCGCCGTCCGGATCGTTCGGGAGACCGGCAAACCGATCGCGCAGGTTGCTCGTGAGCTCGGGATCAGTGACGGCACCCTGGGTAGCTGGGTCAGGCAGGATGAGCGCGCCCGAGACGGTGGTGACGGGCGGCTTTGCGAGAGCGAACGCGAGGAACTCAAGCGGTTGCGTGCGGAGAATGCGGAGCTGGCGATGGAGCGCGATGTTCTCAAACGCTCGGTCGCCCTCTGGGTCAAGGAAGCGATGCATCGGTAGGCCTGGCCGCTGTAATCGCCACTCAGAGGGTAGAACACGGTATCCCGCACGCGGTGTCGTGCCGCGCGCTGGGCGTGTCGCAGGCATGGTTTTACAAGTGGTGCCATAGCGATGGTTCACCACGGCGTGCACGGCGAAAAGCGTTGGCGGCCACCATCGGGTATCTGTTCGCTAAGCACAAGCGGACCTACGGATCACCGCGGATTACCGCTGACCTACGGGATATGGGGGCGGGTGTCGGTGAACACCGTCGCGGCGCTGATGCGTGAGCAGGGTCTGGTAGCGCGGCGAACGCCGCCGGCACGGCACCACGAAACCGGACAAATCCGCGCGTAAGGCCCCCGATCTGCTGGGCCGAGACTTTTCCCCGCGCGACCACCCCAACCTCGCCTGGGTGGGCGATCTGACCGAAATCCCCACCGACGAGGGCAAACGGCACCTCGCCTCAGTAATTGACCTGCATTCGCGGCGGGTGCCCGGGTTCGTCATGGGGGTGCACCATGACGCCACGCTGGCGCGGGCGGCGCTGTGCATGGCCATTGCGGTGCGCGGCGGGTTGGTGGCCGGGGTCATTTTCCACACCGACCAGGGCGGTGAATACACCGGCGAACTGTTCGCCATCGCTTGCCGATCCGCTCGCGTCACCCAATCGATGGGGCCTACCGGGTCGGCCCTCGACAACGCGGCCGCGGAATCGTTCAACTCGACCCTGGAATGGGAATTGTTGCGCAACAACCACTTCCACACACGCGAAGAGGCACGTCACGCGGTCGCCGTCTGGATCGACGAGTATAACGTTGAACGTCGGCATTCCACGCACGGCATGCTCAGCCCCGTCGACTACGAACGCGCCTGTGGTCAACAACGGAGTGAGCAACCAGCCGGTGAACAGCACGCCCAGAAAGGGGCGGCATGAACCCAGAAGGAGGCGGCTTCGCCGCCGCTGTCCTGCCCGCCGAGCGCCGTGGCAGGCTACGGGGCCGCCCCTCCGGCCTCAAGGGTCGCTACCGCGATCGCTACGCGACGGGCCTACGGCCCGCCCGTGACCCCGGAGTCTCTACGGCCCCTTCCCGCACAGCGGCACGGCCAGGAGCAGCAGCCCCTGCCCGCCAGACCCGCCACGGCGCCCGGCTCCTATCTAGATCAAATCCCCACAAACAAGTCTCTACAGTTACAGGGGATTGCCTCGGCGGGGGACCGTTCCGCGTTGGGCGAGCCGTGGAAAGGCGGACAGGTTCGAGCATCGTCCGGGTACCCGCTGGCAGACCCTGGTCGAGCTGGCTCACTCCGCAGCTACGCTCTGCGAGTCGACGACACGAGAGCATTGGCGCGAGCGCATCATGGCGGTGGACAAGGGTTCGGTGGCGAGTGTGATCGCCGCCGCACCCGATATGTCTGAGATCGCGAGCCGGTTCACCGTGGAGCTGATCATGGTCAACCGAGGGAGATTGCTTGATGTCCTCCGCTGAACCGCTCTCACCGCCGACGAGCCGTGCTGTGCGACGCTTCGCGGTTGCCTGGCGCAACCGGCATCTTCGTGTCATCACACCGGTCGGAGAGCTGGACTATCGGGCGGGCGGATACCGGTTCCAGTACCTGGAAGGCGTCGGCGGGTCGGTTGCCGTTGACACTATGTTTATCCTCCCGATTTGGGCTGGTTCCAATGGGTCCAACAGTGCTGGCGCCGTTCGTGTTTTGTCCACGACCACAGCCGTATTCGTGCCGAAATTGCTCTCGCCTGATCGATTCGGCCGCGTCCAACCGCCTGCAGGTGCCCCGGAACGGCGACGATCGCCAACAAAGGTGGTCAGGACTGCAGCGCCGCCAGCGCGTTCTCCACTTCGCGGCGGTGCCGTTCGTCGCAGGCGGCCCACCGCTGCTCGTCGGCGTCGAGGTCGGTGAGGAACGCAAATCGCGTCCGAACGCGAGCTTCCCAGGCAGCCATAGCGACAGGACGGGTCAGCACGCCGATCGAGTCGGGCTGGAAGTCGTGCTCGCTGCGGGCGGCGAGGACGTCTTCGACGCGTAGTGGCCGGGTGCCGCGCCGGTCATCGACGACATCACCCCACACCTTGAGCACCCACAGCCGCCGCACGAGCGGTTCGTCAATGGTCCGCGAGGCGAAGTGGTTGAGGTCGTACAGGTCCCGTGCCAGCGCAACGCGGCGGTACCGCGCGAGTTTCTCTGCGCAGGCTTCGGCTTCTGCCACGACCGGCAGTGTCGGCAGCCCAAAACCGTAAGCCTTATGGATCGGCAACTGGATGAATGCGAGCAGCTCAGACGGCAAGGCCAACGGCCGCCGTGCGAACTCGACGCTGGCTGCGATCCGGGGCTCGCCCAATTCCGTGTGCCGCACCCGCAGCTGCCAGTGCCGGCCGTCGCCTCGTGTGCTCTGCACGCCGAATTCGAAGCCGCCGACACGGGCACCGTCGATCAGCTCGCACACCTCCAGCACGACCTCATCGTCGGGCGCGCTGAAGTCCAGATCAGTGGAGAACCGCCCGGCGTTGCCCAGCCGGCACTTCCGTAAGCTGGTACCGCCTTTGAACACCAGGCGGTTATCGCCGAACTGGACGGTCTGCGACAGCAGGTACAGCAGGTGGTCCTGGGCGACGTCGAGCAGAGCGGCGTCGTATGCCTCGGCCCGGCCAAGAGCGTGACGCGCGACGAGCGCGCGGGTCAGTCCGGCCACACTCACGCCTTGCCGATCACGCGCAGCAGCGGTGCGACGAGCTCGTCGACGAGCTGGTACTCCGGCGCCCAGACGCTTTCGCCGCGGTCGCGGCTGTGCGCGGTGGTGAATCGGGCCACCGGCATCGCTTCTGTTTGACGCTTGGCCAGCAGCGCCTGGCCTCGTGCCGGTTCACCGGCTGCGTCCAGCAGGTAGCTTGCACGCTGCCAGGCCGATGTCGGCCGGCCCGACAGCAGACGCTCCAGGCGCTCGTCACTGCAGTCGGCGATGAGTTCGTCGAGGTGGGCGACTAGATCGGCCCACGGCCCGAATGAGGCTGGGCGCGTGGCGATTTGCACGAGTAGTGCTTCCGGGCCGAATGCCGGTAACCCGGTCGCCCAGGCGACGATGTCGAGCCGCCGCCGTACCAGCAACGCGGGACGCGGAGCAAGCAGTGCGGTGTCAGCCGCGTTCCAGGGGATGCGCACGACGGACACATACGGTGCTAGGCCGTCCGGGAGCCGTTTGACCGGCGGTAGCCAGATCGGGATGCGGCCGTCAGGTTGGCGGTCCAGGTAACCGAGGTGCCACGCTGCCGATGCTCCAGCCAGCATGAAGCCTGCGTTCTGGTCGCGGGCCAGCCACGACCGCAGCGTTAGATACGGGTCAGAGACTGCATCCTCGCCGGGGGGAATGAATGCCCACGTTCCTTTCACCGGCAGTTGGACCAGCCACCCGATGCGGCGCAGTTCGCGGATGGCGGAGTCGGGGTCGCGTTCACACCCGGCCTCTGCAAGTCGTAGCGTCAGATCCTGCTTCGTGACGACCGTAGGGCGATCGCGCGCGAGACCGGACACCACCCGTGATGCCCAGGTGGGGATGCGCCGATCGGCACCGGCTGGGCTCCCCACGGAACTTGAGTTCACGCCGGAAACTATACCGTATCCGTACGAAACACGGTCTTAACTTAAGTCGCTCTACTTGACTCGAAAACGGGTTTCAGACGGTAGTAGTACGAAACCCGTGTCAAACTCAAGTGGTGCACGGTTGGCGGCGGTGCGGTGCAACGGCGAGAGCACAAAGACGCGCGTGCTGAAGTGGGGCGAACAGAAGAGCCAAGCGGATGGGGTACCGCGGATCTCTGCGGTACTTTCGACGAGGTGGCGACCAGGCATCAACGAGCGGGGATTGACGACCGCTGGCACAAGCGGGTCAAGGGCCCGGACGGGAAGATGCGAACCGAGCGGTCTGCTGTCTACGGCAGGGTTTCGCGCTGGCGCGTCAGGTGGGTTGACGGCGGCGGAGAGGAGCACAGCAAGAGCTTCCAGCGCAAACCCGACGCGCAGACCTACCTCAACGGACTGACCGCCGATGTGCAGCGCGGCGACTATGTCGATCCACGCAGGAGCGCCGAGTCATTCGGATCAGTGGCCGAACAATGGTTCGCTACCAAGCAGCACCGCAAGCCCAAGACCGTCGCGGGCTATCGCTCCCTGCTGGACACCGTGGTCCTTCCCAAATGGGCGGACGTGCCACTGAAACGTATTGACTATGCGACCTATTCGACCTGGCTGGGGGGATTGTCGGTGGACGGCTCCCAGCGAGGCACGGGCCTGTCGGCAAGTCGGATCACTCAGGCGCACCAGCTGGTCGGAGCTGTCCTCAAGTACGCGCAACGCACCGGCAGAGTCGCCAAGAACGTCGCCCTTGAAATCAAGCGGGGCCAGGATCTGCCCGAACAGGCCAAGCGTGAGCGTCGCTACCTGACCCATGCCGAACTGCTGATGCTCGCCAGGGCCACGGGCCGGTTTGAAACCCTCACCTTGGTGCTCGGCTACTGCGGCTTACGGTTCGGTGAGGCGGTTGCCCTGAGGCGCAAGCACGTGGGAGATCGAGTGCTGACCGTCCGATCGTCCGCGACGGCGGTGACCGGCAAGGGCATCGTTGAATCGACCACCAAGACGAAGCGGGATCGTCACGTACCAGTGCCTGAACCTGTTTGGCGCAGGCTCCATGCCGAGTTGCCCACCGACCCGAACGCCTTGGTGTTCCCCGGCCGTAAGGGCGGATTCCTGCCTCTCGGTGAATACCGCTGGGCATTCGACAACGCCTGCGACCAGGTCGGGATCGAAGGGCTGGTACCGCACGGTCTGCGGCACACCACGGCCTCGCTGGCGATCAGCGCAGGCGCTAACGTCAAGGTCGTGCAACGGCTCCTTGGACACGCAGCAGCGGCGATGACGCTCGACCGGCACGGCCATCTGCTCAACGACGATTTAGCGGTGTGGCCGATGCGCTGTGCAAAGTCATCGAGAACACTGCGGTATCACTGCGGTATGCGGAGACGGAACAGAGTCGGGCTCCCGGCATGAGATAGCGCGTCTGAACTGCAACGCCCCCATAGCCCAATTGGCAGAGGCAGCGGACTTAAAATCCGTCCAGTGTCGGTTCGAGTCCGACTG