tRNA/fragment and flanking sequence:

tRNA
1692816 cgcgggttcc acaacggttt tacgtcggtg acgtgtagct ccctccgctg aGGGCCCGTA
1692876 GCTCAGTGGA CAGAGTGCTT GGTTCCGGAC CAAGATGCCG CGGGTTCAAA TCCCGTCGGG
1692936 TCCGTTCtac ccttagacgc tccgcattga ccgtacagag gcgtccttgg tccggaac

tDNA Fragment
1700760 atacgtgcaa tagcacgccc acagaccttg tttttgagtt tatttcatac aATGtCGCGG
1700820 GTTCAAATCC CGTCGGGTCC GTccaaattt ttggcgtttt ctatatgtag aaaacgtccg
1700880 actcacgtct tct

tRNA gene (GREEN CAPS): 1692867..1692942
Displaced gene fragment (GREEN, mismatches lowercase): 1700811..1700841
Match (underlined) extends 3-prime beyond tDNA: 0 bp
Index point: nt 66
Mismatches: 3
Damage within repeat (Red): none
Junction: T-stem junction site
Supplemental Island Information
Island Length: 7901 bp
Mononucleotide (difference to replicon): 1.31
Dinucleotide bias (between genome and island): 0.13
Minimum distance between integrase and endpoint: 0.00
Density of hypothetical proteins (fold over replicon): 0.22
Housekeeping index: -5.85

Potential integrases in NC_013967
231538232575
337190337783
340763341785
12950351296105
14868241487981
16996991700862Integrase in the opposite orientation as tDNA
21176312118632
21577662159139
26470892648246
26505812651738
26637162664351

Potential fragments for tRNA-Arg(CCG)
10487661048744
10489941048971
12178091217797
17008411700811


Genes: 3
LeftRightStrandAnnotation
16945601695912+ID=292655973; acc=YP_003535870.1; Name=transposase ISH5;
16959091696406-ID=292655974; acc=YP_003535871.1; Name=putative resolvase;
16996991700727-ID=292655975; acc=YP_003535872.1; Name=phage integrase/site-specific recombinase;

Sequence:     

>Haloferax volcanii DS2|1692833-1700934|100bp flanks
aacacagcgtcgtcgacgccgacgcggtcggaacgtaatcggccgccggcgcgggttccacaacggttttacgtcggtgacgtgtagctccctccgctgaGGGCCCGTAGCTCAGTGGACAGAGTGCTTGGTTCCGGACCAAGATGCCGCGGGTTCAAATCCCGTCGGGTCCGTTCTACCCTTAGACGCTCCGCATTGACCGTACAGAGGCGTCCTTGGTCCGGAACCAACCACTCCGTCAACTGAGATTTGAACACTCTGCGTGACGCGCCTTACCGCCGTCGTGGCTTCCGCTAGATTCGAACACGGTACTCTACAAGTAGATTTCTCAAGATAAACAGAACCAAAGTCAGAGATGGATCACTACATCTGAATCACCGGATTATCTCTGCGTCACGGCCACTCCATAAGGCGGGCTTCCGTCCGAGGGTGTTTGCCCCCACTCCGCTACCACTCCGTGGGTCCCACCTCTCCCTCTGGGTCCGGGTCCCGCCGCCCGCTCCCGCCATCTCGGGAGAGCAAGGAGTGTCTGAATGAATATGTGACTAGCAAAACCGCGAGTACAATCAGAACGTAGTCCCACCGAATGTGATGCTCAAAGCTGTGGGTCCGAACAACTCGTTCAGTCACGTTCTCTTGGAGTGGGTTCATACAACGCCCACCTCACTTCTCGGCATCGTCTGAACGTAGACCGAGATCAGAAGGATAGCTATCGAGATAACCCCGAGTCTGAACCCCGGTGACGTGAGTCCAGAATTAGGTGACGCCAGCTTACTTGGTGCTTTCTCAAAGGGCATGGCTATACCACCACCTCAAGCAAACCCTCACAATGTGGACACCGAAGGTTCCCAGACCGCCCATCTCGGTAGTGTTCGAGAATTCGTCTAATGAGTTCAGAATTAGATACCCCAAGTCGTTCTGACTCACGATTTAGGAACTCACACATAGCATCATCCGTCTTCGTTCCGACCGATATGGAGCCAAAGCATTGAGACATAGTAAATAAACAATTGTGCTTGTACTATATACAAGTTTGCTTGTATACGGTGCGTACTCGACCGTACACAAAGTTTGAGTAACCGTGACTTTAAGTACCTCAAATCACGAGGTCCGGTATCGCGGTTCGCTCCGCGCCGGACACCTCTGTCGGAACCCACACGGAGATACCCTACGTTCATTTGACCGAGCGACCGACCGACCCGGAATAACCGAAAACCTCACCCACCAGGGTAGGAAGACGGACCACGGGGAGGGAGGGAGTGAAGGGACTACATGAACATGGGACAACCCGGATGGAAACGACAAGGAACACGGACATACCCAACCCACCGATACGCGGTAACGGAGGGAGAGGGAGAGGGGATATTTTCTATACCATACAAATATTACTGTGGTGCATTATAACGCCTCTGTCTGTCGGTTTTCTATCTCGCGCATGACGAGCAAAACACACCAAAATTCAAGAAAGCGTTATATACAAGTCCCGTAGCGAGAGAATCTATATACTCATACGGATCTGGTTTCAGATACCGTATAACTCTCCACGTTCCAAGGCACGACTGATTGTACGGCGAGAACAGCACAGTTCCTGAGCCGCTGTACGCTTACTCAGTTCCTCTTTCCGTACGCTATCGAGAACAGCAACCACACGGTCGTATTGTGCGCTCTCTATGAGTCTTCCATCGTCTTTCTCGAATCCGATTGGAGCAGGTCCCATCCGTTCTAGTTTAACGAAGAATCCAGTTGCTGTCTGTTGATTTGATATCGTCGCAACTACCTGATTGAGAAACCCGGTGGGAAGTATGACCTACAGCCCACCGGATTCGGTCATAGTTGACCGGATTCAAAGAGCGTTTCCCTCTGATGAGTTGCGCGAGCGCGCTCGCGCAACGAATCTCGTCCAACGAGAGCGGAAATTCGACATCGTTGCGCTGTTCTACACACTCTCGTTTGGCTTCGCTGCTGGCTCAGACCGCTCTCTCCAAGCATTTCTCGAACGCTACGTCGAGATGGCTGACTGTGACGAACTCTCCTACGCATCGTTCCACGACTGGTTCGAACCAGGATTCGTTGCACTCCTTCGAGAGATTCTCGATGACGCAATCGAGAATCTCGATACCGGACGAGAAGATTTGAACGGCCGTCTCGAACGCTTTCGAGACGTCCTCATTGCTGACGCAACCATCGTTTCGCTGTACCAGGACGCCGCTGATATCTACACAGCAACCGGCGACCATCAAGCCGAACTGAAACTTCACCTCACCGAATCTCTCTCGACTGGGCTCCCGACACGATTCCGGACAACCGATGGGACGACTCATGAACGGAGTCAGCTACCCACCGGTGAGTGGGTAGCTGACGCCCTCATCTTGCTCGATTTAGGCTTCTACGACTTCTGGTTGTTCGACCGAATCGACCAGAACGGCGGGTGGTTCGTCTCCCGGGTGAAGGACAACGCGAACTTCGAGATCGTCGAAGAACTGCGAACGTGGCGAGGCAACAGCATTCCGCTGGAAGGAGAGTCGCTGCAGGCCGTCCTTGAGGACCTGCAGCGACAGGAAATCGACGTCCGCATCACGCTTTCATTCGAGCGCAAACGAGGGTCGGGCGCCAGCGCGACCCGGACGTTCCGACTGGTCGGCCTGCGCAACGAGGAGACCGACGAGTACCATCTGTATCTGACGAATCTGGCGAGAGAGGACTACAGCGCGCCCGATATCGCGCAGCTCTATCGGGCGCGCTGGGAGGTCGAACTGCTGTTCAAGGAGCTGAAGTCGCGGTTCGGCTTGGACGAGATCAAGACGACCGACGGCTACATCATCGAGGCGCTGATCATCATGGCCGCAATTTCGTTGATGATGAGTCGTGTAATCGTGGATGAGTTACGGTCGCTCGAGGCAAGACAGCGAGAGGGCGAAGCCGCCGCAGACGCCGACTCGTCGGCGTCGCGGCTCCCTCGGCGTCGCTGTTCGCTCGCCGTGGAACGCCACGGTCATCTAATCCAGTTGTATCTCATGATCGAGTTGGGCTACGAACTGCCGGATTTGGACGAGCTGTTGCTGTGGGCGTCACGAAATCCAAATCCACACAGAGATCGGTTACGTGAGCAGGTTGAACGAGGTGAGTTCGGCTTTGATCGCTACTAAACTAGAACGCATGGAGCAGGTCCATGATGATACTCGGGATTCGCCTGACGGGCCGCTATGCCCTCTCGCGTGTTCATCCGTTTCACTCGCGCCTCCCACTCCGCGAACGCTCCGAGCATCTGCATCTGTAGTCTGTGCATGGGTTGTTCGTCGCCATCCCCGAATGAGAGACCATCCCTGACGAAATGTATCGTCGCTCCCGACTCCATGACGCGAGAGACGGTACGATCCAAATCTTGGAGTGACCGAGCGAGACGGCTAATCTCATGGACAACCACCGTATCCACCTCTCCCGCCTCTACGTCGCCCATGAGGCGCTTGTAACCCTCTCGGGAGGTGTTTGTACCTGTTGCCTTGTCTCGGTACACCTGAAGCTCTGAGAGGGCCACATCGAGTTCACTCTGAGAGTAAGTAGTAGTGGACTCAATCTGCCGGTCAAGATTCTGCTCAGGAGTAGAAACACGGCAATAACAACCGACCTTCATGCCCACCACTTAGCACTTAAAAAGGGTAGCCTTTACGCCCAGACTGTGCGAGAAGGACCGTAACTGCATCCGATCCAGACGGGAAGTCCATACCTGATTTCAACCCATCTACAAGTTTTTAAGACCCTATTCCATTGTCAAACGGTATGGGAAATAGCGATATGGATCTTGAAGCCGAGGAATTGAGGCTTATTGATCTACTGGGTGAACGAACCCGTATCTTCCGTGTTCCGATCTTCCAAAGGGAGTATAAGTGGAAACAGAAGCAACGTTCCGAATTATGGGATGATATTGAAACGATAGGTACTGAGGCAAAGCCTTCTCACTTTGTCGGACAGGTTATTCTTGTAGAAGATGAGAGGAAGTCCGACGAAGACGTAGACACATACAAGATTGTAGATGGCCAACAACGACTGACTACATTTTCTATACTAGTCTCAGTACCTCACAAAGCATCCTCGGCTAGCTGTTTCTGAAGCCTGAGTTCTGTGTCGGAGCGGTTGCATTGACGGTCTCGACGGGAGAATCATGGACGAATCGGTGGAGAGCTGTCGCTGTCGGCGGCGGTCAGCCGCTGACGCGACAGCGTCGCCACTCACACCGCTGGCTAGCCCGGTCAAGAGTTACCGGCTAAACCGGTCGTCTGGTGGCCGGTTCGCGGGGACGGCCCGACGCACCGCGAGGGCCGTCCACGCTGCCCGTCGAATCAAGTTGGTGAATTCCTTGTACGACCACTCCCAGAGGCGACGCCCGCCTCGGCGGGGCGTCGCCACGTACTCCCAGTGCAGATACCGCCACACGTTCTGTAACAGCAAACTCACCACGACGTACAACAGCCGTACGACCGGATTCTGTGTCGTAGTCGTCGCAATCGTTTGCTCGGAGAGTCGGTAGCTCGCCTCGATACCGAAGCGTTTCGCGTAGTGGTATCGAGCGTCTCGTGGTGAGTTGATGAACGGCGCGTCAGCGGCGTAGCCGTGACGCGCCACGCCATGTTCGTCGTACCGTCCGTTCTGGTAGGTACAGTCGATGTAGACGGGAAACTCGACGGTCCAGCTGTGACCGTCGAGTTTCGCTGTCAGACTGTGCTGAATCACGCGACTCCACCCTTCTGAGAGTTCTCGCTTGATCGTTCGTCCCCAGCGGACGATCGGCATGACGTACGCGTGGTTGTGCGCCTGAAGCAGCGTCAAACACTTGCTGTCGTAGAATTCGCGGTCAAGATAGACGGCCTTGACACCGAGGTCAAGGCCGTCGAGAATACCGAGGAACTCTGCGAGGACACTGCTGGCGGTGTCGCCGTCTTCGAGACGGCGCACCGCCAGCGTGTAGCGTTTGTTCTTCACGCGTGCGTACAGTGTCGCGTACGCGTGGAACGCGGTGGTTCCACGTTTGCTTGGGAGTGATAGAGACCGTCCGTGTCGTCTTCGTCACCATAGTAGGGCCGCAGGTGGAGGTCTGCGCAGACCTCCCCGCAGGACGTCGAGAACGTCCTTCTGGAGGAGCGTGTTCCCGATTTGTTCGAGCGTCTCGAGGTCGAACTTGGTGCGGAGATGGTAGAGAACCGAGTTTTCGTGAGGTGCATCTTCGCTTCTCTTGCAGAGTGTAGAGACCGAGGTCCCGTCGGCGCAGGCGCCGACGAGGACCTCGTAGATGTCTTCAGCACCGATTTCAGCGTTTTCACCGAGAGTGAGTGCAACTTCCTCGTCAAGGGAGTTGACGAGGAAGTTAAGGAGCTGGTCCTCGTGGATTGAACCGTCTGCTTGCTTGGTATTAGACACACCTTCAGCAAGCGGACGTCTCAACTAACCAGCTTTGTGATGTACTGAGTCTGCGCAATTCGAGATGCTGCAGATCTCCACGATAACAAAAACGTAGAGAGCATACTCACGACACATGATAAGAACGGAGACGAAATACGAACTCTCCACCTCCTTGATGGAGACGAAGAAGCATACCAACATCTCTACGATGGAAGCCCAGAGCTGATTGAAGAGGATCACCGAATCCGTGAAGCATACGATTTCTTCAAGCAGAAGCTATCTGATCTGGATACCGATGAACAAATAGACCTTCTCAAGAACGTCGTCAACAATGTTGATTTAGTTCGGACTTCGTGTGGTAGTATGACTGCGGCGTACCAAGTGTTTCAAACACAAAACGACCGTGGGCTTGCGTTATCTCCGCTTAACCTCGCTAAAACAAAACTCCTAGAAGAGGCGAGTCTGGTTGGACTGAACGAGGAGTCCGTTAGACGCCGTTGGGAAAACATTTCCACCCGGTTAGAAGAAAACGACCAGGTGAGCAGCGCAGCCCCCCGAAGAGCGTTTACGCACTACTTGATTGTCGACGAAGAATACGACGTTCGGAGTAGAGTGACCACCAAAGACTTCTACCGGACATTCGCGGCTGCTTTGGACAAGCATGAGGGGGCAACAGAGATACGTCGATTCATCTCAAAGCTTGAGGACTACACAGACAGGTACATAGATATCCACGAAGGAACCGTTCGTAAATATCAGCGTAACAAGAGGAGTTTGATTAACGACCAAATGAGGTTCTTCCAGAGCAAGAATTCTCATGCTCCGGTTGTTCTCTTGTATCTTGTCGAGAACATTGATACAGCGGACGAGATGGAGAATTTACTGCGATTAGCGAACAAGCTGAATGTCCGTCTGAACTTGCAGGATGCTGCGCCAGCTTACCATCGAGACAGCATGTACCAACTTGTAACTAAGCTCATCGATAGTAAGCAGTCCAAGTGGGAGGATGAAGCAGAAGATCTAATAAAAGAACGTACCGTCAGCGACAAGCAGTTAAAAGAGATATTGAAAGGCCGAGAGCTTCCGAACAGCCGCTTCACCCGTTTCCTGCTCCGTGCTCTGGAAGAGGATTACTATAACGCTGGCTCTCGTGAGACCAGAATTGACCTTGACCAAGTCGATCTTGAGCATATCGCACCGCTTAGCTCTCTTTCATCGGAGAGATATAGCACATGGGCAGCGGTCTTCAATCATAATGAGGAACGCTTTGATCACTACAAATCCAGACTTGGAAACCTTACGCTACTTGCAGACCGGCAGAATTCGAGAGTAAGGAATGGCTCGTATGCTGAGAAGTGCGCTGAGTACGAGCAGTCAGATATTACCATGACTCAGAGAATTCCAGACAATTATCCTTCCTGGGGCTTTGAGACGATAGAAGACCGTACCCGGACGATTGCTCAAGATATCGTGAATTTGTGGGGTGTGTAAGACCTAGTTCAAAAATAGGCTAAAGGTTGCTGTGGATACCGTCCTATTCAGATATTGTTTAGGTAGCCTCTCCGTTGTTCTACCTTCTGTTCCTCGGTTCTCTGATCGTAGTGCTTTGAGAGAACTTGCTGACCAACGTTCATACGGTCGCTAACAACTTTCTCAGGAACATCACGAGAGAGGAAGTGCGTGATACTCCCTCGCCTCACGTCGTGCGGAGAGACTGAGGACGGGCACTTACTGGCACTCTTTCGGTGATCATCCAGAGCCTCACACGTCGCAACCTCACGGCCGTGTGGGCACTCTCCCGTGTATTCACACGGTCTTGTGAGACGGTACACGTTCTCCCGTATAGCCGTCCGAGACACACGCCCCTGAGATGTAGTGAATAATGGCTCACGGCCGTAGTCATCACTCATATCGGGACGCACATTCTCTATCCAGTCCGTAAGCACTTCACACGTATCCGGTCGGAGTGCAACTAGTCTCTCCCCCTCAGAACCATTCTTGAGTGGTGTGTCTTGCTCCGGCCTGTGGTGCAGTCTGATTCGGGCTTGTGGTTCATCGTAGTCCTGTAAGTCAAGCCCGCGTGCCGCTCCGAGACGGATTCCAGTCCGCCAGAGTAGGAGTAGAAGCGTATGCTGGAAAGAAGCGTACTGGAAGCGTTCTAGGCGATTCAGAATCTTTGTGGCTTCCTCATTCGTGAGTATAGTTTTCTTGTGGTCTTCGTTAGGCGAGAGAGACGGAGAGACAACAGACTCACACAGATTGTTCCTCACGGCGTCAATCCTCTCACAGAAGCGAATAAACACCCGTATCGTATCCATCTGAGTCTTCAGACTCACGTTAGATAGATTTCCTACCTCACGTCTCCAAAGGCGATACTGATGCATCCTCCGTCCACTCAGGACATTCAGATTCTCTATGTCTTGTTCATCACACCACCGTTGGAAGTAATCCAAGCGGTATCCGTGGGCCTTCAGCGTCGCCTTCGATACCTCTGTTTCTCGTTCTTGTAGGTACATCTCGACCGCTGTTGATGGGTCGATAGGTTCCAAGTCGTGTTGGTCTGGCATGGTTCTGTTTGGGAAGCCAGACTGAAACAGCGATACGTGCAATAGCACGCCCACAGACCTTGTTTTTGAGTTTATTTCATACAATGTCGCGGGTTCAAATCCCGTCGGGTCCGTccaaatttttggcgttttctatatgtagaaaacgtccgactcacgtcttctaccggcaggtctcatcgcgggtatatatactcgcgagcaggggccgaaa