tRNA/fragment and flanking sequence:

tRNA
1489130 cgggcggggg agggctgata aagtgacacg cggccggtcg agagaccgcc cGGGGCTATG
1489190 GCGCAGTTGG TAGCGCGACT CGTTCGCATC GAGTAGGTCA GGGGTTCGAT TCCCCTTAGC
1489250 TCCACCAgta aaagcccagt tcagggcatg tattcggact cgtcgcgact acctcgga

tDNA Fragment
1495562 ttggaacgaa aacatgccct gaactggtac gggtgaaatc ggcacgaatc gCGTTCGCAT
1495622 CGAGTAGGTC AGGGGTTCGA TTCCCCTTAG CTCCACCAaa gtgttcttac tcgaaccggt
1495682 gcccgaaagg atgtcggcga gggagagag

tRNA gene (GREEN CAPS): 1489181..1489256
Displaced gene fragment (GREEN, mismatches lowercase): 1495613..1495659
Match (underlined) extends 3-prime beyond tDNA: 0 bp
Index point: nt 35
Mismatches: 0
Damage within repeat (Red): none
Junction: anticodon attachment site
Supplemental Island Information
Island Length: 6403 bp
Mononucleotide (difference to replicon): 1.34
Dinucleotide bias (between genome and island): 0.06
Minimum distance between integrase and endpoint: 2.26
Density of hypothetical proteins (fold over replicon): 0.53
Housekeeping index: -7.58

Potential integrases in NC_013441
12458841247281
14892981490614Integrase in the opposite orientation as tDNA
27616422763495
28571342858987
36556773657176
50589755060828

Potential fragments for tRNA-Ala(CGC)
14956591495613
48923184892301


Genes: 11
LeftRightStrandAnnotation
14892981490470-ID=262201386; acc=YP_003272594.1; Name=integrase family protein;
14904671490706-ID=262201387; acc=YP_003272595.1; Name=hypothetical protein Gbro_1420;
14908551491550-ID=262201388; acc=YP_003272596.1; Name=resolvase;
14915731491740-ID=262201389; acc=YP_003272597.1; Name=hypothetical protein Gbro_1422;
14917241492257-ID=262201390; acc=YP_003272598.1; Name=hypothetical protein Gbro_1423;
14922541492550-ID=262201391; acc=YP_003272599.1; Name=hypothetical protein Gbro_1424;
14927351493283-ID=262201392; acc=YP_003272600.1; Name=hypothetical protein Gbro_1425;
14932801493477-ID=262201393; acc=YP_003272601.1; Name=hypothetical protein Gbro_1426;
14934771493791-ID=262201394; acc=YP_003272602.1; Name=hypothetical protein Gbro_1427;
14937881494708-ID=262201395; acc=YP_003272603.1; Name=hypothetical protein Gbro_1428;
14950161495237-ID=262201396; acc=YP_003272604.1; Name=hypothetical protein Gbro_1429;

Sequence:     

>Gordonia bronchialis DSM 43247|1489116-1495719|100bp flanks
gaaagctgggccacagaggtgaccctatcggcccggacgcgtttgtgatcgggcgggggagggctgataaagtgacacgcggccggtcgagagaccgcccGGGGCTATGGCGCAGTTGGTAGCGCGACTCGTTCGCATCGAGTAGGTCAGGGGTTCGATTCCCCTTAGCTCCACCAGTAAAAGCCCAGTTCAGGGCATGTATTCGGACTCGTCGCGACTACCTCGGAGTCGTCCCGTCCCGCAGTGGTCCCGCAGTAGTTCCGCTCGTGGCCCGGATCTTGGCATCGAGCGCACCGGCCACGAGGTCGAGATCGTCATCGAAGAGATCCGCGTAGGTGTCCAGGGTCATAGACGCCTTGGCGTGGCCAAGCATCCGCTGAACCGCCTTCACGTTGGCCCCGGCCGAGATCGCCAGGGATGCCGCGGTGTGGCGCAGGTCGTGCGGACTCAGCGAGGGGAACGTGTCGTCGGCCCGCTGGCAGCCCTTCACCGCCTTGTCGAACACGCGCGGCCGCCATATCGAGTTCCGCAGCACGCCCCCGCTCTCGGCCGTGAACACCAGGTCATCGCGGCCCTTGCCCGCCATCAACGGCGCGATGGTCTCGGCCAGGACGGCAGGGAAGGGGACCGACCGGCGTTCGTGGGTCTTGGGCGTACCCCAGACCAGGTGACCCCTGACCTCGGTGACCGACCGCGAGACGTCGACCCGGCGGCGCAGCATGTCGAAGTCGGACACGCGCAGCGCTGCCATCTCACCCCATCGCAGACCGGTGTAGGCCAGGAGCTCGACGACCTCGGGACGGAACGTGATCGCCTCGGCCAGCGCCTGCACGTGCGGCACCGACAGGTACGCCCGGTCAGGGTGCGAGCGCCGGGGCAGCTTCACGTTCACGCATGGGTTGGCCGAGATCCGCCGGTCATCGACAGCCAGTTCGCACAGACCGCGGAGAACGCCGACAGCACGCTCGATGGTCGGCACGCCCACGCCCGCCTGCGCCATGTCCGCCACCCATGCCCGCACAGCGGTGACCCGGATGTCGCCGACGGTCACGCCTGCCCACCGGGGCATCACGTGGCAGCAGTAGGCAGTCTCGCGGGACGCGATCGTTTTCTGGCTCAGGTGGCCGGCCTGCGCGGTCCACTCACCCCACAAGGCCGCGACCGTGACCCGACCGGCGCGCTCATGGACGAACCGGCCGGTATTGCGCGCCGTGGTCAGCTCGGACAGGTACGCGGTCGCGTCCGACTTCTTGTCGAACGACTTCGAGTGCTCGCGCGACTCATCGACCCACCGGACAAGCCAGCGCTTGCCCCGGCCGTACTTGGCCGACCGCTCGCCGGTCGCGGTGTGCCAGGCGTCGGTGATCCCTTCCCGCCGGTTGCGGTTCACGAGATGCCGTGCGCAGCGAGGGCGGCAGTGATCCCGTTGCGCAACGCGATCAAGCGCGCCGCGTCGACGTCGATGCCGTTGCATTCGGGGTCGCCGTCGAGCACGGTGATGGTCCACCGGGGCGCGCCGTAGTCGTCGCCGTCACTCGGGTAGGTCTCGGCGATCGTCACGTCGCCGAGGTCCCGCACGCCGGTAACCGAAAACCATTGGCGCTCAATCTCATTCATATCGCTCATCGTTCGTTCCTTCTCTCGGCGGAGGTGCGGATCTCGCGCCCCCGAGGTTCTCAGGCCGGTGTGACAGCCTTGGCGTAGTTGTAGACCGACTGCCGCGAGATCCCGAACTCGCGGGCCAATGCGGCGACCGACTCCCCCGCGTTCAGGTCTAGGCCAGTGCGGCGGCATCCTGACTGGTCAGCACCGCCCGCACGGTCGACGCGTGCCACGTCGCGCCGCCCCGCACGGTCGGGATCCCGGCCGCGGTCAGCTCGGCGGCGATCGCGCGCAGGCTCTTGCCCTCGGCCTTGGCCGCGACGATCCGCGCGGTGACCTCGGCCGGAGTCTCACTCGGCCGTCCCAGACGAACGCCCTGCGCCTTACGAGCAGCCAGTGCAGCCTTGGTGCGATCGCTGATCATCGAGCGTTCGAGTTCGGCGACGCCGCCCATGATCTGGGTCGTGAAGCGCCCTGCGGCGGTCGAGGTGTCAACCGTGCCGTCGACGGCGACCACTGCGCCCGCGGCCGACTCGACCCGGTCGATGACGTCGAGCAGGGCGCGCAGGTTGCGCGCCAGGCGATCACTCTTGGCCACGACGAGAGCGGCGGCCTGGCCCGACTCGACCGCTGCCAGAGCGGCGGCGAGGCCAGGGCGCTTGTCCGCGGCCTTGCCGCCGCTCACGCCCTCGTCGGCGTACTCGGCGACGAGGGTCCATCCACGACGGGCGGCCTCGGCCGCGATGGCGGCGCGTTGGGCGTCGAGACCCGCGCCGCTGTCGGCCTGCTCGGCAGTGGACACGCGGACGTACGAAACGACCGTGTTGGCGGGGGCGGTGCGGCGCTTGCTCATGCCCTCAGTGTACATGAATCGACCGTTTTATGTACACCTACTCGGCCGACAAGGCATCGAGAGCGACGATCGCGCCCTGGAAAGCGGCGTACTCGGTCGGGGTCGCGGTCAACTCGCCCGCGTCGATGGCGGCCAGGACGCGGCGCAGGTGCTCGGCACTCTCGCGGGCCTCGGCCAGGACGTCGCGGTCAGTCATGGCGTTCATCCTCGCCGCCCTCATCCCACCGGGCAACGGTGGCCCGGACGCCCCTGGCCAGCGCGTCGAGCATCGACACGGCAGCCTCGGTGTGCCCGCTTGCGTCGTCGGCCGCGTGCGTCGCGACCCTCGTCAGCCGCTCTATCGCGTTGCTCAGGTCGGAAACCGCACGCGCAGAAGGTAACTCGGTCTCGACCGTCTCGACACCCTCCCGGGTGGCGATGTGTTCTAATCCCTTGTCCCACAACCGTTTACGTATCTCAAGCGCGTCGGTTAAGGCCGCCTCGGCGAGTTCCTGGCGCGCCAGGCGCAACCGCTCGGCCTGGACCTGACCGGCGATCGGCGCAGGCCACCACGACAGGCCCCAGCGGCGCGATGCCCTGGACAGGTCGGGCTGACTGACGCCCAGATGTGCGGCGGCCTGTGTCTGGGACAGGCCACTGTCGCGTAGTCGGCGGGCCTCGGCCTCGTCGGCGTCAGTGACCGCGCGCGCGGATCGAACGGGGTCACGGCTCTCATCTGTCATCGGCGGCACGCCCTGCATTTGTCGCGGTGCCCCGGGTGAAGAGCACCAGGGTTCCGCGCGAGCAACTCCGCACAGCGATCGCAGAATCCGGCCGACAGCGCGGCCTGGAGGTCGGCCACCTGATTCCCGACGCCGGGAATCACGCCGCCATCCTTCCGGAAGATGAGGCTGCGGAGGAGGTCGCCAAAAGCACGCGGGAATCCGAGAACAGCGCCCGGGACGTCCCGCGGCGAGGCCGGGTCGGGACGGAAATACAGGTCGGGCTCGCCGTTGCCACCGAGTACCCAGCCCATCACCGCCTCCGCTCATGCTGACGCTCGCGTAATGCCGACCGCCGAACGATCGAATCAAACTCACCAGCACACCGGAGAGCGCTCACGTAGAGCTTGCGCCGCTCCTCGGGGTCTGATGCCGCGGCGTGCCGGTTGCGCAGTTCTGTGAAGCGTTCAAGTACCTCGGCGGCCTCGTCCTTGCGAGTCACTGCCCGCCCCCGGAGATGTCCCTGAGTGCCGCGCGACGACGGCGACGGCGCTCGTTCGCGCGATCGAACGCGGCGCGACTCGCCGAAGTCTTGCGGTCACGAGCCTTCTCGACCTCGGCGGTCGTGAACCGCTGGCGAGACCGGGCCAGCTCGGCGCGCCCGCTCGGAGCAAGCCGCGAATCAATCACCTTGACGCCGGTTGTCGAGCACGCCGGGCATTCGTCCGTGCCTTCGCGGGCGGTCAGCTCCTCGCCGTCGGGTCCCTGCTCCCGCAAGTTGCCCGCCTTCTCGGCCAACTCTGACTGCGCGACGGCCTCGGCCAGGTCGCCGGCCTGCCGCGCCCTGTGCGCGCGACGCCGAAGAATTGCCTGTTCCACCCCGCTATTCACCGTGTTGGTTGCGAGTTTCGCGCGGTCGATCTGACTCTCGGGAACCTCGGAACCGCAAGCAGGGCAACGTGTTGGGCGCTCCTTGCGGATAATGCTGGATCTCGGCACGCCAGACTTGCCTTTGCGATCACCAAATACTTTGTCGGCTTTACTCATTCGCTTTCTCCTTTGTGTGTTGTTGAAACGGACCGATGAGCCTCGACAGCATCGGCAAGGCGCGAGGCCAGTTCGAGAGCCTCGGCCGCGGTGAAGGCGAACCGCATACCCGAGATCCCGAACCGGATCGGGCAGCGGCCGTCAGTGACGACGACCTCGGGCACCTCGCGACGTGTAGACATCCGGACCAGCATCACGTCGCCCCTTCGGCGATGTCGGCGTGGTGCGCCAGTTCGGTTGCCAGCGCGTATGCCTGGCGCGGCGACAGGTCGGCCACCGGGACCTCGGCGACCTCCAGGACGACGAGGTCCTGAATCGCGTATACGACCACCGCAGGACCGCCCTCGGCGCGGATCGCGACCTCGCGGTCAACCTGCGCCCGATCCCGATCGGCCAGGACGCTACCGATCACGACGCGAGCGACGAGGCAATGCCAACGGGCGGCGATCCATCGGTCGACCCGGTCCAGGCGGCGCTGAAGACGGACGAGTAACAACTCCAGCCTCATGCTGCCCTCCTTGCGTGGTAGAGATCGAGCAGTTCGTAGACGTCGATCTCGCTGAACATGTGTCGGGTGGGGTCGCCGTCGGTCGGGTCGAGGTCCGCGACGATGACCCGGATTGCCGCGGTGAGTGAGGCTCCCCAATTCGCGGACCGGCGATCCTCTCCGAGCGCTGCCGTGCCCGACTTGGCCCAATCGTCGAACGCGACGAAAACGGATTCGGCATGAACGTCGATCCCGCGAGACCACGCTGTGTGCAGCTCGGACCAGTGTGCGCGGTTCGGCGTCCACCTGTCCGGGAGCGGAAGCGGTGACCGTGTCTGTTCGAGCGACCAACCACGCTCGAACCGGGCCGTGACAGCGGACAGTTCTGCCCTCGGTTTCGTATCCGCGTGCCCTGCCGAGGTCGGCGAAGAGCTGTCGTGAGATCCGTTGGCAACGTCAGAGTTCGGCAGGGCACCAGTAGAAAAAGAACCCTGTTCTTCTTTAAGACCCCTGTTATATGTGCGCAACTTCTTGCGCCCTGTAGCGCGCAACTTCTTGCGCCCTGTCGGGGCGGAAATCTGGCGCAGATGAGCTGCCGTGAACTCGTCGTCTGGGAATCCGGGCTCGACGTACTCGCCAACTCGCAGCCGGTACAGACTTGCTCGCTGCGTCCCGTCGGTGCGGTAGCGGCGGACCTGCTGAAGGTAACCCGCGTCGGCAAGCCGCGTGAGGTATCCGTCGATGGATCGCTCGCTCGCGCCGAACTCCTCGGCCATCGTCTCGCGCCGCAAGAAGAACTGTCCCATCGGGTTCCCGATGTAATCGCTTGCCTCACTGGCTGTTTCACCACGATAGGCGTGGCAGGAGAGGTAGCTGTAGAACGCTGCGATTACGTGCGGCAACTCGGCGAAGATTCTCATATCCACGCGCCCCCACATCACCCGGGTATCCTTGGCGGTGTAGACGATCTCTGAACACTCTTCTTGGGGTGTCGCTCTACGTGTGGTGACGCGCCCCCGGTTTCCTCGCCGGGGGCGTCGTCGTGTGCGAGGCCCCTGTCTTCGATCGCGTCACGCGACGACTGGTCGCACACGGGGCGAGAAACAGGCCTGAGAGGCGATCTGACGCCCGTACCAATGCGATCGGTCACCTGATACCCGCCACGTGGTCCGAAGCCGCCAGCGGCCGATATGGCGTCCATCATGCGATCCGTCATCCCGGCGTCGGGCACGCCGTGCTCGACCCTCATGCGACGCCCTCCGCCTGAGCAGCCTCGGCCTGAGCCTCAAGGCCGGCCAGCCACCCGACGATGGCCGACCTGCGCCACAGGCGGCGGCGGCCGACGACGATCGACGGCGGTAGATCGCCCCGGCATTCCAGCGCGCGCAGGGTGCCAATCGGTATGCCGGGCACTAGGTCTCGATGGATCTCCTGATACCCCATGTACGGGTCGAGATCGTCTGACATGTCGTTCGTTCCTCACCGATGTGTCCGCCCGGCCCCCGTGTCGGGACCGGGCCATCATCGGCGGCGCGTCGTGGTCATGTAGACCACAGTACCAGCGATGACCAGCACTACCAACGCGGAAACACTCTGTGCGGCAAGTGTATCCATTATCTCACACGCTGCCCGTCGCCGGATCGTGGCCCGCCCTCAAGGCCGACAATCCGACCCAACAAGGCGTCCCGCAGTGGTCCCGCAGTGGTCCCGCAGGACGACCAACACAAGGCGATGGATCATGTCGCAACCAACGCAACCAACGAAATGCGATTAGCCTGCGCCACAGTTGTATTGGAACGAAAACATGCCCTGAACTGGTACGGGTGAAATCGGCACGAATCGCGTTCGCATCGAGTAGGTCAGGGGTTCGATTCCCCTTAGCTCCACCAaagtgttcttactcgaaccggtgcccgaaaggatgtcggcgagggagagagccaaatcagaagaagagtcgtcacccgtacgcttcgaggcccccgccag