tRNA/fragment and flanking sequence:

tRNA
341010 atttgagtat atttatcacc tgttgcatga aacactgcag cgactaacca aGCCCCTGTA
341070 GCTCAGTTGG TTAGAGCAGC TGACTCTTAA TCAGCGTGTC CAGGGTTCGA ATCCCTGCGG
341130 GGGCACAGtt cggaaggctc cggtcgatta tcggccgggg tctttttgtt ttccggctt

tDNA Fragment
350314 gggataaaag cattagacgc acgtacgggg tggggttgat cgtcggctgt gAATCAGCGT
350374 GTCCAGGGTT CGAATCCCTG CGGGGCACAG acaaccggaa tcgaaaggtt ccggtttttt
350434 gttttccggc aaccggcaac c

tRNA gene (GREEN CAPS): 341061..341137
Displaced gene fragment (GREEN, mismatches lowercase): 350365..350403
Match (underlined) extends 3-prime beyond tDNA: 0 bp
Index point: nt 67
Mismatches: 30
Damage within repeat (Red): none
Junction: T-stem junction site
Supplemental Island Information
Island Length: 9266 bp
Mononucleotide (difference to replicon): 1.17
Dinucleotide bias (between genome and island): 0.04
Minimum distance between integrase and endpoint: 2.38
Density of hypothetical proteins (fold over replicon): 0.44
Housekeeping index: -2.23

Potential integrases in NC_017218
190259191548
290985292718
349308349505Integrase in the opposite orientation as tDNA
349503350252Integrase in the opposite orientation as tDNA
16500551651524
16509031652486
16522701653538
18307601831836
18325311832839

Potential fragments for tRNA-Lys(CTT)
350403350365
774170774158


Genes: 10
LeftRightStrandAnnotation
341601342464-ID=384196442; acc=YP_005582186.1; Name=transposase mutator-like family protein;
342468343229+ID=384196443; acc=YP_005582187.1; Name=hypothetical protein HMPREF9228_0274;
343277343969-ID=384196444; acc=YP_005582188.1; Name=hypothetical protein HMPREF9228_0275;
343995344699-ID=384196445; acc=YP_005582189.1; Name=ABC transporter ATP-binding protein;
345170345886+ID=384196446; acc=YP_005582190.1; Name=response regulator receiver domain-containing protein;
345904347064+ID=384196447; acc=YP_005582191.1; Name=hypothetical protein HMPREF9228_0278;
347198348403+ID=384196448; acc=YP_005582192.1; Name=transporter major facilitator family protein;
348569348880+ID=384196449; acc=YP_005582193.1; Name=hypothetical protein HMPREF9228_0280;
348896349261+ID=384196450; acc=YP_005582194.1; Name=hypothetical protein HMPREF9228_0281;
349308349433-ID=384196451; acc=YP_005582195.1; Name=hypothetical protein HMPREF9228_0282;

Sequence:     

>Bifidobacterium breve ACS-071-V-Sch8b|341028-350494|100bp flanks
ataatcggctcgtctacacgcgacacgccgaagcttgcgagagtctcagatttgagtatatttatcacctgttgcatgaaacactgcagcgactaaccaaGCCCCTGTAGCTCAGTTGGTTAGAGCAGCTGACTCTTAATCAGCGTGTCCAGGGTTCGAATCCCTGCGGGGGCACAGTTCGGAAGGCTCCGGTCGATTATCGGCCGGGGTCTTTTTGTTTTCCGGCTTAATTCTGCTGATGAAATCCTCATCCTGGCGATAGTAGGTATCGTCGGTCAGATCGCTAATGGTTACGCCGAGTTCTGGCCTATAGGAACTTTTGTGGTGCTTTAGGTTTGTCCTATCTCCGTTCTGAGTGGCGGCCGCGTCCTGTTCTCGTGTGGCGTTTGTTCCTGTGACGGGCACTGTGACGAGCGGGGCGTTTGCCGATCTCAAGGAGTCGGAGAACGAACAGCAGCAATCCCGCAACGGAGGAGACGAGCGGCAGCCAGTGTCCGTCGGCAGAACCGCTGCCGAGCGCCTCTACGAGGTCGGACAAGATCTGGATGAATTGCAATATGGTTTCAATGATTTGGGCCATGCCGGCGTCTATGCGTCCGGAGCGCACGTGGTACCGGCCCAAATGCATGGAGACCGGCGGTCAGTCGTCGGACCGCCACGAGACGTGGGCATGGAACTCGTCCCAGCTGATTCCGGTGCCATATCTCGGTGCGCCGGTGCCGTCACCGGTCTCCTCCTCGACCGGTGACGGCCTTGCCGGTCTCCAGTGCCCGGCCCTGATCAATGAGCCGGGGGCGGGATTCCCGCTTTTCATGTAGCACACCCATTCGCAGGCTCGCCTCATATGTTCCTCGGGCAGCCCGTGGTGGTCGAGGAGCACGTGCTTGAGCGGCGAGTTGACGCCGCCCTCCAACCGGTTCGTGGTGCGCGCCACCGGGCCGGCGGCCGTGAGTTTGGGTTCGAGGAACGCGAACAGCTTGCCCTCGCGGAACAGTCTCTCCAGCCGCCGGTAGCAGCGGCGCAGCTCCTGGTGGGTCCACCACCACTCCTGTTTGGACGCCTTCGGGTTGGCGGGGTCGTCCTTCGCGAAGGTGCGTTCGGCTATGAACTCTCTCCAACGGATGTGCCATGCGTTGAGCGCCTCGCCCCACCTGGCCGCCGCCTCGGCGTCACGGATCTTGGTGAGCCCGTCGGAGAGCTTCTTGAGCTCCTTGCCGGCCTCCAGCCTGGGCTTCGAGGTCAGGTCCGTCCTCGTGTTGCGCTGCACGTGCACCAGGCACCGCTGGATGCGGGCGGCCGGCCAGGCCTCGTTGCAGGCGCTTTCCGCGCCGCGCAGCCCGTCCGTGATCAGCACGTCGGGCGCGGGGATGCGCGAGAACAACGCCATGTACGCGGCCTTCGACCCGTTCGAGCACCACTGGAAGCCCAGCACCTCGCCGCTCTCGCCGTCGATGGCTATGACCAGGCACCAGCCGTGGTTCATGTACGTGCCGTCCGCCATCACCGTATGATGTTTCACCATCGGCGGTGGGATCACGGGCCGGACGTTCCAGCACCACGCGGTGCGCTTGCGCAGGGCCCGCGAATCGCCGTTCGCGTCGCACGCGGACTGGGAGGCACGGCCGAGCAGCCAGCCGAGGAAGGCGTCGAGCTGCCGGGCCCGTCCAGCATTCTCCTGCGGCATCGTCGAACTCAACGAGCAGGCCGCGCACTTCCAGCGCTGCACCCCCTTCGCGGTCCGACCGTTCTTCTTCATCGGCCGGCCGCACACCGGGCATTTCTTCGCCTTGGCGGACTTCGTTCTCATGCGTCCAGCCCACCACCGGAACGCCCCTATTTTCCCGCCGGGAAAAACGACACCCCGACACGCCTAATCCCACAAGGCCAAAGCCAGGTTATAAGCACCACAAAAGTTCCTATAGGCCCGAGTTCTTTAGCGGCGAGATACATCTTCTACAGTCGAATTTCTGATCCCCCGTTGAGCCGTTGGCGGCACCGGGATCTCGGCTGCTGGAGGGTGGGGCCGGCCGCCATGATGCCGCGCGTCGACTGCCCCATGTGCGGCGTGGTCGTCGCATCGGCGCCGGGGGGCGGAGCCCGGCGGCCGGTTCACCCGGGCTGTTCGAACGCGGGGCTCGAGGCGTTCAACAACAGGATCAAGGTCGCCATCCGCATGGCCTACGGCTTCCACCACGTCACCAACCTCATCGGCCTGGTCATGCTCAGATGCGGCGGACTCGACATCCGACTGCCACAACCCGCAATCTAACCCACGAAAACAGCATAAGCCTTACTTTTTCTGGGGATGTGCATTGGTCAAATTACGTCTTCTTTCGTGATATGTCGAGCTTTGTTGATTGTTGCGCAGAGCGCCGTAATCGCAAAAACGAGGCAGGTTCCGATTTCGATGACAACCGTCCAGCCTTTGGCGTCGCTGTTGGCAAAGCCGTTGGCGGCTATGGAGCCGAGGATGATTGCCGCCACGATTGCGGTGACGCCCGAGCCTCGCAGCAGTCCAATCAGCCCGCTGATGACGCTTACGCTGGCGGATAGTATGGCAACGCCGAGAGCTTCGACCATCATGCTTGCCAATGCGGGGAGACGGGAACCGTCTCCGGTCAATAGTGCGTAGGGAATCAGGGGCGCCGACATGCCTGCCCATGTGGCGAGGAACGTGCCGGACCAGATCATCGCGTTTTTCACCAAGAACAATGGGGCTCTGCCGCAGGGCCATGCATAGGTGATTACGCGGCCCGTGCCGGAGTAGGCCGGAATGATGATACGGGCGTAGTGGGCAGTTGAGGCGATGGAGCAGCCGGCGGTGGCGACCGCGCAGGTCACGGCCACCGTTAAGTCGGAAACCAGGAAACCGAGATGATCGACTCGGGCGATACCCACGATCCTGAAGAACAGCAGTGACAGCGAGCTGCCGATAAGAGTGGCGGCCAGTAGAAACAGGTAGAACCTATACGAGGTGTATTGTCGTTCGATGCGGTAGACATCCAGCATGGGACATGCTCCTTGGTCGTTTGTGTTAGTCCTGAGTGTGGCGGAAATAGTAGGATTCCAGGTCGTTGATGTCGCTCGTGGCATGTTGCGCTTTGACGGAACCGTGATTGATGACGATGACCTGGTCTCCGATGGTTTCGAGTTGGGCGAGCATGTGCGCACTGATGATGGCCGTGACTCCTCGTTTGTTCTCTTCCCGGATGATGCGGCAAAACAGCTTCATACCCGTGGGGTCTAACCCGTTCATCGGCTCATCCAGGAGCAGGAGCGTGGGATGATGCGCCAGGGCCGTTGCCAGTGCAAGGCGCATGCGGTTGCCCATGGACAAGGTATCGGCCGGTAAATCCCCCATGGAGGCCAAGCCGACCCGTTCCATTGTTTCGTCGGGGGACCAGTCGCATCGCATGAACGCTAGATGCTTGTGGAGGATGGCCCGTACGCTCATGCCTCGCTCGAAGACGGGAATGCCGATCAGCATGCCGACCTGTCTCAATAGCATGTCGCGGTTCTCGGGGTTCATGATACGGCCGCGGATATTAGTTTCACCTTGGTCGGGGGCGATCAGACCACCCAAGGTTTTGAGCAGCGTGGTCTTACCGGCCCCGTTCGGGCCGATCAGGGCGATGGTTTCTCCGGGATACGCGCTGAATGATATGTCGTTCAGGACCGGTTTTCCGCCGATAGTTTTCGACACCCTGTTGCAGTAGAGAGTCGCCGATAGCGATTTCATTTCATCTCCTTTTGGATGACCCCGCAAGACAGCCCACCTCCTTATCGCTTTAGGAGGGCAAACTCTGACAGTTCCCTGTCTTTGCTTGGCTCCCCGGACTGTTGATCCCGTTCATTTGTACGGGCATTCGTTAGATTACGAAGGGTTTCGCCATGGACCAAGGTCTCATCCTCGAAAATGAGGATTATCTGGCGCGGTCAGGCTGTCGCCACACCCCTTTCAGGGGCCGACGTAGATTCTCTGGGCCTGAGATAACAAGGGAATCGGTTGTCATCGGAGCGAAATCAGACTGCTGTGTTTCCGGGTTGCATCTGAGGTCAACGTGTCTTGCGTCACATCTTTCCTGCGCCAACTTCAGCGCATGCGTCGATTCCCGGATGGGAACTGTGCCGCGAAACCTGGACCGTATCTTCAGCATCGTGGAGGCAATCACCATGGAGGACTATCTCCATTGCCACTAAGCGGCTATAGTGGAGAGACGGCATGTGTCATATGCGTGTCAGACTTCCGCCGACCCGTGGAACGTTCGTTCCCGTTTGCCACGTTTAGGGGGACTCGTGAAACCTTTGCCGACGCTCCTGATCATGGACAACGACCGGCTGGCATTGCGATTGCTTTCAGCCAGTCTCAAACGTCTACTTCCCGGCTGCACGGTTCTTGCCCCAGTCGATACCGGCACCGAAGCCATATCCATCTGTTCTTCGCACCGCTGCCCGGATCTTCTGCTGGCCGATGTCTCCATGTCCGACATCAACGGATTAGTAGTGTGCCGGACGATCAGAAAAGAGAATTGGAAGACATCCGTACTGATGATGACATCGTTCAGCGTCGCCGAATATGCCGCTGAAGCGGTGGCTTCGGGCGCCCAGGGAATCATACATAAGGACAATCCGAAAACAATCGCCGAGGCTTTGCTGCAGATCAGGGAAAGGGGAGTCTGTTCTGATTGTTTCCTGAATGCCCACGATTCGTTTTTGCGACTGAAGTCGGCAAAGAACAAGGATCTGTCCCCTCGTGAAATGGAAATCGTTGATCGATGGTCGCGAGGGAGATCGATGTCCGATATAGCGGAGGAGTTATCGATCGGTCAGACCACGGTGCGCACCCATCTTGAACATGCCGCGTCCAAGCTGGGGGTAGCGAACAACCGTGCATTGATTTCCGCTTGGATGCATCTTAATCGTTGATGAGGATTTCCAAGAATATGGCGTTTACGTTTCCGTCAAAAATAATTCGACACTATGTGGCACATCCCTGTTTGTCCCTTCTGTCGCTGCTGGGGCTGTCTCTTGCCCTGATGGAGATAATCCAAATCGGTCCCATGCCTCTTCTGCCGGCAATGCTCTATGGAGTGCTTGCGGTTTCCTTTGTCCTTCTCCCCGTCATCAACGACCAAACATGCTGGGCCATCATTGTTGCAGGTTCCGCGATCTCCATCTCCCTCACTCAGGACAGTCCCTTCGTTGTCAGCGGCATGCTCATCGCTCTCGGCATTCTTGCGTTCTCCGGAACCGTGTCTGAATGGCTGATCGCAATGCTGATTTGTTCCTGTACGTATATAGCGCGAAGCGTTATGGTGGGAAACTTCAATGTTTTCGTTTCCGTGTCGGTCACGGTCATGTTCTTGGCCAGCTTGCTTGCCGGCAGATTGGTAGCGCTTCGCCAACAGGCTTTTATCAGAGAAGAGCAAAGGTTGAAATTGCAGCTTCAGCTTCAGCGGCTTGATTATATGAAGCAGAAGAATCGTCTTGCAATACAGATACATGATTCCTTGACCAATAATCTTTCGGATATCTCATTAATGGCTCGAATTCATATCGATGACAACATACCCGACGGCGATGATTGGGCAATCGTTCTTGAACATAGCCAAGAGGCGTTCACGCAAGTGCACGACATCATAGACATCCTTTCCTCGGAAGACAAGGATGCGAAATCAGAAACGACATTCATGGTTGAACTGCGTAATCTGTTGGATGAAAGATGCAGCCATCTTCATGCGCTGGGTTATGAAGGGGATGCGACCATCGAGGGATTTTGCATTAAAACTACGCAGGAAGAAAAGGAAGAAGTGCTATCTCTAATAAAAGAGATATGCAACAACATACAACGTCATAGCTTGCCGCACAATGGCTCGTTCGAGTTGATCGTCAGGCTGTCACCCTCGTCAATGGAAATTAACGAGATGAATGATATTACAGCCGGATCGTCGCTGGCTGCATTCGAACAATCGGGAAGGGGCCTTTCACTGCACTCAAAACGAATACAGGAACTGGGAGGCGAACTTAACTATAGAAGTGATGATGGATTGTGGGTGCTCTACGCCAAAATTCCGCTGAGTCATATGGAGACAACAAAAACTTGAAACCAAGTATAGCGAGAACTTTTAAAAAACAACAAATAATCTATCGTAGATTAATACTCCAGTATTACGAATACAACAATCAAAACGCGGAAATATCATTTTATTTTGTATTACTCGGAGGAGGAGCCAGGTAATGATTCAGCGCTATAGTCAAGGGATGTCAGCAAGAAGAATCTTCCCCATATTGCTGATTGCGGAAGGATTATGCCTATCGGGCATGAGCGTGGATCTGACAATCACCTCACTGGCCGGTTCATCCCTCGCGCCAGCACCATGGATGGCAACATTCCCGATAGCGTGCATATTCATCGGTACGGTGATCGGCACACCGGCAATGGGACGCTTGGTGGGGCGATTCGGCTATCGGCAAGTATTCGTCTTCGGCGCCCTTCTGGCCGTCTTGGGTGGAATATCCTCAGCCACGGCTTTGCGATTCCACCAGTTCCCATTGCTCTGTATAGGGACGTTCTGTGTGGGCATATACCAGTCGGGGACGAACTACTACCGGTATGCCGCGGCCGATTCCATGCCCGGCAAAGAAAGCAAGGCAATCAACGGAATCCTATCAGCAGGAGCCATAGCAAGCATCATCGGCCCGGTTCTGGCGACATTCTTCGGCACTGCGACCAGCATCGAATACGAGGGGTCATATTACGTCGTCAGCGTGCTCGCCGCCTGCGCGGTAATCGTGCTGCTGGTGCTCCCGAAAATTCAGTCGCCAACTCCCTCGCATATGCGCGACAAAGCTATCGCGAGCACAACCCCTAATTATCCGGCATTGCTGACCCGACCCCGGTTCGTGCTGGGCGCGACCATCAGCTTCGTCGCATCATTCGTCATGGTGCTCGTGATGAGCGGCGCGCCCATAGTCTTGGAGAGCACGTTCTCCCAAAACGCGCAAACCAGAATGGTCGCCATGCAACTGCACATGGTCGGCATGTACCTGCCAACCCTGTTCGCCATCTTCATTTTCCACAAGAAAAACAGCGAAATGGCGCAGGCGTTGACGGGGTTGATCGTCGGCATGCTCGGCACAGTCGTCGCACTCGCCGCGTCGGCTTCTTATGCCGTTACTCTGGATCTGCTGCTGATCGGAATATCCTGGTCGCTGTGCTACGCCGCAGGCAGCGCCCTGTTGACAAAATCCTATGCGGAGTCGGAACGTTCGTGGGCGCGAGGCGTCGGCGAACTCGCTCCCGTATTGGGGCAGGTGCTGGGAAGTGTGCTCGCTGGCGTGCTGCTGGCCGCGGGGTGGAAAACCGTATTCGTCACCGTGCTGGCGATGATCGTATGCGCGCTCATCGCCATGGCGGGATATCGCAATAAAATCAAGTCATAAGCGCAAATGACATGTCCTTAGACGACATAGCCTGTTTTGCTGTAGCTGGTATTGCTGTCTATTTAGAAGTGCAACGCCCTTGTTCGTTGGTTAATTCTAGCAGTTCGTCGGCGAATGCCTCGGCCGCCCGATTCGCAAACCAATTAATTGTGGTACAATTAAATCATGGCAATTAGGTTCGACCCGAAATCCGCTTACAAGCATTTCGAAGAGGACCGTCTGAGCGAAGAGCAGATCAAGCAGTCGATGCGACAACCGGTATGGTTCGCATTAATCGACCCTAATGACGTGGAGGTTCCGCCTCCGGCAGCCGATGTGACATCACCTGTGGTGCTCATGATCTGCAAAAGGCATCCCGGCGCGTTGGACGACGACCTCATCGAATTGCTGATAACCATGGACGGCCGGGACAAGCTCGTATTTCATGCGGAGCGTCTGACCGACAAGTGGCGCACGTACTGGCTGAAATGGCGATAACGAAAGGAGAAGCGCATGACTGCCAAGAAATATCTCGACGCTCTGGCCGATGAAAACGGACCGGCTCCCTCGAACCCGCCCATCGCGGCTTTCTCAGGGAAAGAGGCGGCGGACTTCGCCGCGATGCTGATGGACGATTCCGTTCCTGCAGCCGACATGTTCGCGGCCATGAAGACGGCTGGCCGTCGCGGTCGCCCCGCCGCGCAAGAGAAACGGGAGAAAAGCGTACAGGAACGGTTCCGCCTCCCCGAATCATGGAGCTCCTACATCGACCACGCCGCCAAGCGTGACGGCTTCGCCAACAAAAGCGACTACCTCCGCTCACTGGTCATGGCCGACGCCGAAGCACACCACGAAGAGCGGCGACTCCAATTGGCCTAATCCATCACGACAAAAAGAGTGCCACCTGAATCAGGCGGCACTCTGTTCAGTTGGAGACATCCTGCGGGCGGCGCGCTCTCACCTTGCGTGCGATGAAGGTGAGATCCGAGGACGGCACAAAGATGTAGCTTTGGGTCGTGACCGATGACTCATGACCCAACAGCTCCTGCACGGCACGAATGTCATTCCCGGATTCCTCGTAGGTGATGCGTCCATACCGTCGGCGGAATGAATGGGTCGGTCAACCAGTCGTGCGCTTGATGACCCGATAGGCGTGATCGACGCAGCAGTGTCCATCGACCTTGCCCGGAAACAACCAGCCTTCGCCGGCCGTACTCCTTATTTCCTGTGCCAAATCATTGGAGATTGGCACGATGCGGGTTTTCCCTCCCTTGCCGTGAACCAGCAGGTGGTAGATCGACTCTCCCGCATGAACCGATTCGATGACGTCCGGCCCTTTGACTTTGCTGATTTCTTCTCGTCTCAGTCCCGCCTCGGCGTCCAGTCTGACCATCAGCCGTGCCTTGAGGTTTTCAGCCCAGACACCTGCGGCAACGGCGCTCTCCGGTGCAGGTTGCTTGGTCGGTTTCTTCGGCCGCTTGATGGGAGGCAGCGATGCGACAGGATTATTCTTCATCTTATTTGAGCGTACCGCCCATTTGTAAAACTCATTGATGCTCGCTCTCCTCCCGGCTTTGGCGCTTGCATCGAGATCCGACTCGGTCAACCAGGATTGAACATCGACGGGCGATACCTGTCGCGGCGGTTTTGAGCAGACCCGTGCAAAATCAGTGACGCGGTACCAATAGGATTCGACGGTTCGTTCTGTCAAACAACGTGCCTGCATATCCAGCACCCACTCGTCTATGAGTTTCGTCCATGATGCAGGCGGTTGCCGATGCGATGTGAACATTGCCATGTGGCCTCCCTTTGTTGCACAACAAAACCGGGTCGCAGGCCGCGACCCGGTAAGACCAAGAAAGATGAATCAACTGGGAGATTTATCTAGTCGTGTTGCTTGGTTGAGCGGGACAGCATTACGCGGAGACAAAGGGATAAAAGCATTAGACGCACGTACGGGGTGGGGTTGATCGTCGGCTGTGAATCAGCGTGTCCAGGGTTCGAATCCCTGCGGGGCACAGacaaccggaatcgaaaggttccggttttttgttttccggcaaccggcaaccctatgggcgcgttggcgcggttcgtcgtggggcgaagtgtagaatcgcc