tRNA/fragment and flanking sequence:

tRNA
385548 actaaccctc aagtctgagt aatattaact tttgctgttt gaaacagccg aCGCGGGGTG
385608 GAGCAGCTCG GTAGCTCGCT GGGCTCATAA CCCAGAGGTC CATGGTTCAA ATCCATGCCC
385668 CGCTACTAat caaagcctag aaatcgtgcg gtttctaggc tttttatttt cttcttgcc

tDNA Fragment
393274 ttgtcaagac ctagaataaa caataccaaa ctcggataaa ctgtagaaac gTGGGCTCAT
393334 AACCCAGAGG TCCATGGTTC AAATCCATGC CCCGCTACca ctgagggcta ggaatcgaat
393394 tcctagccct tttgcttttc cagcgcatg

tRNA gene (GREEN CAPS): 385599..385675
Displaced gene fragment (GREEN, mismatches lowercase): 393325..393371
Match (underlined) extends 3-prime beyond tDNA: 0 bp
Index point: nt 36
Mismatches: 0
Damage within repeat (Red): none
Junction: anticodon attachment site
Supplemental Island Information
Island Length: 7698 bp
Mononucleotide (difference to replicon): 1.21
Dinucleotide bias (between genome and island): 0.10
Minimum distance between integrase and endpoint: 2.41
Density of hypothetical proteins (fold over replicon): 0.57
Housekeeping index: -10.27

Potential integrases in NC_017214
6005061162
391920393173Integrase in the opposite orientation as tDNA

Potential fragments for tRNA-Met(CAT)
393371393325
16890671689051


Genes: 9
LeftRightStrandAnnotation
385765386910-ID=384190089; acc=YP_005575837.1; Name=hypothetical protein BIF_02162;
386998387204-ID=384190090; acc=YP_005575838.1; Name=hypothetical protein BIF_02161;
387239387730+ID=384190091; acc=YP_005575839.1; Name=hypothetical protein BIF_00709;
387727388488+ID=384190092; acc=YP_005575840.1; Name=Cell division protein ftsK-like protein;
388485389402+ID=384190093; acc=YP_005575841.1; Name=Replication protein;
389386389613+ID=384190094; acc=YP_005575842.1; Name=hypothetical protein BIF_02186;
389633390751-ID=384190095; acc=YP_005575843.1; Name=hypothetical protein BIF_00872;
390751391863-ID=384190096; acc=YP_005575844.1; Name=Modification methylase EcoRI;
391920393140-ID=384190097; acc=YP_005575845.1; Name=DNA integration/recombination/inversion protein;

Sequence:     

>Bifidobacterium animalis subsp. lactis BB-12|385535-393433|100bp flanks
atccgtgggtaaaacccgcccgaaagtggtaaggcgacacgccggcttgactaaccctcaagtctgagtaatattaacttttgctgtttgaaacagccgaCGCGGGGTGGAGCAGCTCGGTAGCTCGCTGGGCTCATAACCCAGAGGTCCATGGTTCAAATCCATGCCCCGCTACTAATCAAAGCCTAGAAATCGTGCGGTTTCTAGGCTTTTTATTTTCTTCTTGCCCTACGCTAGAACGCGGATTTGGACAAATTCTGGACATACTATCGTCCACTCTTGCTCTTCTTGCTCTTTTCCTCGCTATCTGCACGTAACTTTTCATACTGCACTCGCTCTGCCTTAGTAGGACTTGCAAGCCTATCCGGTAGATCATTTACCGCAAGAATTGGCTCGATGTACAGCGAATATTTGTAATGTCGTTCATTTAACCCAAGCACTCTCTCGCATTCTTCCTCAAGCTGCGGCGGTATGGTTATGCCGTCTTCAAGAAGTAGGCGACGGATTCCATATAGATTCGTAACATTTGACTCCAGATAATCGAAAACACTGGAATAGATTTCCGCCGGACTGATACCGTATTCATCCTTTTCCGTAGACAATGAATACTTTAAGGAGCTTTCTGCAATCTCTTTTACCGTGTTCAAGCTTTTTTCTAGTTCGAGAATTCTATTCTGCTGGAATTCACCCATGGCTTTCCCCGCAACCATGCCCCGAAATTCGTCATCTAGAGGGAAACGATCAGGTTTGCTCTGGATATACTTCAGCAGCTCTCGTCCCACGAACCGAGAAGTCTCTTCGCTGGAGGGGCATCCTCCACGAACAGCACCCCAATCGATGAACGGGATACTCGTTTCAGTCTTTCGGTGAATCCATTTAAGCCCGATCATTGCCCTTGCCGCTGTCATGAAATCTGGTGCGAATGGTGTAAAAGTCACCCACTTACCCTCAACTTTGAGCGCACAGACCCAACCATTTCGAAGCACATACCAGTTTTCACGTGCCATCATGTCTCTAGCCAATTCAGTGGACACTCGTTCGTTGTCGCTCCTTGCCAATGATCCTTGCACTTTCCTCGGAAAGAGAGTCGCACTCACATTCAGGCCGTCAACAAACTGTTCAAAGTCGTCCGGCCTTTCGAAATTCAGAACCTCCCTGCGCAAACGCCAAAGTTGCCTGTACCTCTTCAGCTCCGGCAATGGTATATCCACGTTCATGAGAATCCGAAGCACATCATCACCAGTGAGCTTTGATCGTCCTGTAAAGATGCTCTTGGTTCTATCTTTGCTGAATCCCAGCTGCTTACCTACATCTTGCAGCTGCATGTGCTTTGCTTCCGCATAGTTCCTTAGCGAAGCCACCAACATTTTGCTATCGATCTCCATACTCACCTCGGCCGTATCTTTTTTCAAATTTTGTTATCCCAATGATATCAAGGTCTCAAGCCACATCAGGTGTAATTTCTGCACTCGAAATTCGTCAAACCGAACTGCATGTTTTTAGATGGAATCACCGACGAACACGAACGAAAGGAGGTGAGCAACATGGCAAACACCACGGACCCGATTTTGCACGTAGAAATCGTGCAGGGTGTGAGCAAGGCGGGTAAGCCATACGAGTGTCTCGAAGTTCTTCTTGGAGAGGACTCCGTTGGCCGTCTCTTCCCAACTCCACTGGAAATGCGCTCTATCAAAGCCGCTCTGCAAGATGAATCAGACATGACGTTCTGATTTCTCCTCAATGGCTGTCCCGAAGTGCCGGAGCGAACCTCAGCTTCGGCACTCCATCTTCACTGTTTTCACATTTGTCATATTCGAACCAGTCCAAGGAGAACCAATGGATTTCATCACCAAAGCGCAACTGTTCGCACAAGACCACTTCATCGTCATTGCAATCGTTCTCTTCGCCCTCCTCGCTGTGTGCGCGTTCTTCATCGCACGTCACAACAGCCGTGCAGCCCGCAAACATGACACACTGTGCGCAAAACCACTCAGCCTGTCGCCAGACGAGGAGAAAGCAGTGAAGGTGAGGTACGCGAGGAAGCCCAAGCGCGTGATTTTCTTGCTACCCGCCGCACTCACTACAGACGAAGACGTGAATGCATGGGCAGATGCGGTTGCCCCACGTCTCGGCCACGCATTCCAAGCAGTGAACGTGGAGACAATCCCACAGGGACTGTTCTCAAGAGCAAAATACAGGGTCACATTCGCCCGATTAGAGGAGCTTCGATGAATATCTTCAGAAACCATCGGAAACTGCCGTCAGACCGATATTCTCTCGGTCTTGACATCGCCGACCCGAAGAGGACAGTCACAATCCCGCGATCTGCACATCTTGCCGTCATCGGAGAGTCCAACAGCGGCAAAGGTAGCGTCATCGCCAACATCATCTCTCAGGAGGTGGCATTCGGCGGAGAAATTTGGTTCATCGATCTGAAAGCAGGCATGGAAGCAGAGAACTACTGTAACGTGCTGGCCCGTAAAGCCTACACCCTCGAAGAAGCATATGATCTGCTGACTGATTTCAACTCGAATGTGGACACACTAGCCGCCGAATGGCGCGGCAAGACGCGCTCCCTCACCGACGCCCAGACATGCCACCGACTGCTTGTCATCGATGAAGCGGCGGACATGGTTCGATCGGGCCCGAACAAAAAGCTATCAGACTCGTGCATCGAGTTGGTGCGATCGATTCTCTCACGATCCCGCGCTCTAAACTGCACGGTCGTGGTAGCTACCCAGAACCCGCGGGTAAGCACCAGCTTGCCATATCGGAGCTTGTTGCTCACTACCGTGGCACTTCGATTGAACTCTAAAGGCGAAGCCACCATGGCGTTGGGTGAAGATGCAGTGAAGCGTGGAGCCCGCCCATGGCAGATACCTTTTTCTCGACCTGGCGATGGGTATTTGTGGGATACCGAGACTAATCAGACGGTCTATCTGCATGTTCCATTCATCAGTGACGAGGAGCTGCACCGGCTGCATCGGTGACTCGGCTGGCGATGGGCGAAGCGTCAGCGAAAGCCCAGACCCAGCAGAGTCGCCGCCTGAAAGGTGTATGGGGGCCTACTACGACTGCCCCCATACGAGATGTGAGATGCGAGAAAGGCGAGAATATGACCGACGATAATACGCAAACCAGCCTGAACGACAAGGGTCGGTATTGGGCGGGCTTGATCTACCCCGACAGCTGTCCCGATGACTGGAAAGCAACCATGCAAATGTCGGGTTTGCAGATACTGGTTTCGCCAGTCCATGACAAGGACATCGAGGATCCTAAGACTGGGAAGTTGAAGAAACCACATAGGCACGTTGTCGCAATGTGGACGAACACGACGACACGTCGCAATGCGACACGTTTCTTCGAGCAGTTTAATGGGCCGAAAACCATACTGCGAGTGGAAAGTCCGCGCGGAATGGCTCGCTACTTGGTCCATCTCGATAACCCTGAAAAAGTTCAGTATCTGCCGGAAGATGTGATTGAGATCAATGGAGCCGATTGGAAGAAAATCGCGCTCACAGATGAGGAACGACCAGAAGTTATGGAACTTCTGGAACTCATTGAGGAGTGGGAGGTGCATGGCTACTTTGAGTTGCTCAAGCTCTGCGAGCTCAAGAAACCGAAGTTACTACCGGTCGCAGCCAAAGCGACAACCTATTGCCGTGAAGTCATCTGGTCATATTGGCAGTTCAAAGAACGGAACTCGAAGTTCAAAGACGAATTAATGGAACGTCAGCGTGAAGAACTGCGGAGGAAGAAAGCCACTGAGCAGACGAAGCAGCGTGCGCAGAGAAAGAAGCTCGATCAGAGCGCTCGCAAATCTCGGAAAAATCGTCGAGTAAAAAACCAACCGCAAAAAAGCGCCAAGAAGCAGAGGAGGAAGAACCATGGCCACCGTGCCTAGCAGCGAAACCCCGTCAGATCGACTGAAGTTCTACGATGTGAACGATCTACGGCAGATGTTCCATGTAGGACGCAATAAGGCTCGCCTAATGATGGACGCGCTTCCCTCGATTCGAGTCGGCAGCAAGGACTACGTGACAGAGAGCGCTCTAAACGCGCACATCGCAGAGCATGGAGGCATTCTCGTGAAGTGGCCTAAGCGCAATCGTTAGGCCACTCATAGCACGAGGCTTACTTGTTGCTCTTTTTGATGTTGTCCTTGACACAGAGCATCACACAATTTTCAAGAATCGTCTTGCCGCCCTTGCTCCATGGGATATTGTGATCTGCTTGCATCTCGGAGAGCTCGAAGTGTTGCTGGCACAACGGGCAAATGCCCTTTTGCTTTTCGTAGGCAGCACGCCTATCTCGATCGGTGAATGCGCGAATATTCAGGACGCGTTCATGGCCGGTCAGCAAGTACTCGTATACGCCAGACTTTCGAGTTACGTCGTCGTCTGCCATCAACTCACTCACTCGATCTTCAAGTGCCTTGGGGTCGTACTTCTGCTCATGATACTGGTTATACCAGAGACCCCACGGAAGCCCTTTCATCTCTCGCCGATATACGGGGAAGAGTGATTCCGTCCACTCGATTACCGTACGGAAATAACTCCACAGCTCCTGAGCAGTCGGGTCATTCTGGTGCGCCGACATGTATCCATCGACCGTAGTGCCGTCACGGTCTGCGATCCATTCGATTGCTGTCTCAAGGATCTCTTGTCGGATACTCTCGCCCTTGACGTAACCGTTACAACCCTTGCTGTTCCCATAACGGGCCGCTGGGCAGTTTGTCTTCGAAAAATAACGTTTTGCGTCCGATACCCACGGCCCTGCATACACAGCATTGCGGAGCTCTTGATTAGTGAGCCGTTCTCCTGCAATGTTGATGGTCTTGAACCACTTGAGTTTCTCAGAGTCCGTGCCATCACAGATGTAGACGAGAAGTTCGTAATCAAGAATCCTCTCCTGAACGTCTTCGGGAAGGTTATCGAAGTTCATAGCATTGTTCTCGTACTTGATTGAGAAATTGCCATCGACGTATTCCATCAGGCTTATGGTGCGCTGTTGGCCATCAAGAACTTCATACGTGTCATCGCCTGTTTTAGCCCAATACATCACATTGAGCGGGAGCCCCTGCAATACGGTATCAATCACGGCATCACGCTTCGCGTCCTTGTAAACGAATTCACGCTGATAGCGGGGACGAATATCCAAGCGATCGTCATAGCCGACCACACCCTCTTCATCATCGTTCTCATAGTTTTCATATACGTCGCGAACCTTGATGCGGTTTTCAGTGATCTGCATTACTTTCCTTGCGCTTCTTCGAGAGTGACTGTTTCATAGGGGCGAGGTTCGGGGTGCAAGTTGCGGACAAGTATCCGCCCGAATTTCAGCTTGCCGTTGATGTATGGGCCGTCCTTACCAGTAGAGGACGGAATGCCGGCTAATCCCCGGATATTGCCAGCAAGTAGCCCGATAATCTCGAACTGATCCGGATTGAACTTGTCCATGAATGTGACGGGTACACCCATGATTCCCTCATAATCACAAGGAATATCAATCACCTTACCGACATTGATGGCTTCGTAATTGTCATACTTTGGGTAATCGTCGCGATTGTAACGCTTAACCAGAACTAGGTCTTCATGGCGCTTCTTGATGTCGAGATTGGTGTACCAACAGGCATTTCCCATGGATCGCCACTTCTGCCCGCTCTCATCTTGCCAATATCGCGTTTTACGCGGCTCATAGTCATCTGGAACCTTAAACGCCATATCGCCACAACCATAGCCCAGCCAGACTTTGTTATCCCGCAATAGGGGGAAGAACTCCTTATAGGTGATAGCGTTTTGGTTACCGATGATGATGAATTTCTTATCATGCTCCACAAGGGTAGACACGAATTCACGGAATTTCGAGAAAGGCGGATTGGTCACCACGATGTCCGCTTCATCTAGCAATCTCAGGCATTCTTCTGATCTGAAATCGCCGTTGCCTTCTAGACGTTCGCAAAGGTTCTCGCCCTGCTTGAACAATTCGGCCACGTCAACCATGCTGGTAGCACCATCACCATTGGCATCACGCACAGAAGTCACAACAGCCTTGTAAGGCGTGCGCCTTTCCTCTTCTGTGTCGTCACCGAAAAGCGTGAGCTCGTTCCCTGTTATCGGGGATCCTGAATAGCAAGTTGCAATGAGCTTCTTCAACTTCAGACGATTGAAATTTAAGCAGAAATATTTGAAGAAATTAGATTCGAATGGATCATCACAATTGCACAACACCGTCTTGCCCGCAAAATGCTTCCGATAATGTTTCAACTCAGATTCGATGTCTGACAACTGAGTGTAGAACTCGTCTTCTTTCGCCTGATTTGCTCGATTGAGAGGCGTAGCCATGCCTGTATCACCACCATCCATTCATTCTGATCGATTAATTATATACACCCTAGATCTTCAGCACTACCGATAACCCACTATTCCAACAGCTTGCCCATAAAATCGGCAGCCTTACGATCATTCTCGCCCACTTCTTCGGCATAGATATTCAGCGTTGTGTTCAAGCTCTCGTGCCCCAAGCGCGCCTGCACAGTCTTGGGATCCACTCCCCCCGCCACCAGCAGCGTGGCTTGAGCTCTTCGCAATGCCTGAAAGTTCGGGCCGATGTATCCCGACCGCTTCACTCGTTCTATTCCGCGACGATCGATATAGGTTGATTCGTGCGCGTAATGTGCCAGTCCCTCTTCAACATAGAATTTCCTCCTCCATCTGCTGAAGTTGTCAGGATCGAGGAAAACGCACAGATCATTACTGCATACTGGCGAGGATTCCTGCAAAGTAAGCCCCACTTCTGCAAATAGCCCTGCTTGCTTGGTCTTCCACTTCGTAAGGAATTCTACAGTCTGGTTATCAATAGAAATCGTGCGGCGAGACTTTGCTGTCTTCGGGTCTTTAAGTACTTTCTCCTTGCCGTACTGTTTACGAATCCGGAGACGTGCGTTCTCTAAATCAACATCCTCCCAGACAAGCGCCAGCGCTTCGCCGCGCCTTAAGCCAGTTGCCAGACCAAGCCAGACTGCCACAATCCGACCGTCTTGCGGCTCATTCTTAAGCTTGTGCACGAACTCCAAGGCCTGTTCTTTTGTAATTCGCGTTTCTTTGCGTTTCTGCGGACTTACCTTTGGACGTTTGATATCCTCTACGGCATCGCATGGATTACGCTCAATCAGTTCCTCGAGGTAGGCTTTGCGCATGATCTGCGCCAACTTCATATGCACCTTATGAATCGCGTCAGGCGATGCGTTGTCTTGCTCTGCCATGTGCAAGTATGCTTTCTCTATACGCTGTGCATCTAGATCCACTACGCGAACATCACCGAGAAACTTCACGATGCGATCAATCTCGTGCTGATCTCGTTCGATAGTCAGCGAAGACACCTTTCCGAGAGCCCTCCTCTTAGCTTGGAAATCGGTTGCATACTCTCCGACAGTAACGCTCTTCCCACTACGAGCATCTTCTAGCTCCTGCCTGTAAGCCACGAGAGCTGCTGTGGCTTCTGCCTTGTTTCCCTGAACCTTGCGACTCTTTGACCAGTGCCACGATTGGTGAGTATCGTCCGGTGCAAGTCGCACACGAATCGAATACCGCCGACCGCGCTCCAACTCTTTGATCTCTCCCGATGTCTCTCGCTTCGCCATCTTTGACCTCCTTCGTATGTATCCAGTGTATCATTTCTGGACAATTCTGGACATGGATGCAGTTGGACAAAAGTTGGACAAAGTCACCAATCACCATTAACAGAAATCAATGAATTACGGCGTTTCTAGGTCATTGTCAAGACCTAGAATAAACAATACCAAACTCGGATAAACTGTAGAAACGTGGGCTCATAACCCAGAGGTCCATGGTTCAAATCCATGCCCCGCTACcactgagggctaggaatcgaattcctagcccttttgcttttccagcgcatgaaaccgactccgcgcaccaatcgaatctacgtcaccgtccacactcccc