members magnitude count unassigned taxon rank tax_tmrna 9330 1 Saltern species 9 unidentified species 5 fish metagenome species 25 mosquito metagenome species 5 ant fungus garden metagenome species 1 insect gut metagenome species 21 metagenome species 8977 Bacteria superkingdom 1 Thermobaculum genus 1 Thermobaculum terrenum species 2 Dictyoglomi phylum 2 Dictyoglomia class 2 Dictyoglomales order 2 Dictyoglomaceae family 2 Dictyoglomus genus 1 Dictyoglomus turgidum species 1 Dictyoglomus thermophilum species 1 Chrysiogenetes phylum 1 Chrysiogenetes class 1 Chrysiogenales order 1 Chrysiogenaceae family 1 Desulfurispirillum genus 1 Desulfurispirillum indicum species 35 uncultured bacterium species 65 Cyanobacteria phylum 1 Gloeobacteria class 1 Gloeobacterales order 1 Gloeobacter genus 1 Gloeobacter violaceus species 14 Prochlorales order 14 Prochlorococcaceae family 14 Prochlorococcus genus 13 Prochlorococcus marinus species 1 Prochlorococcus marinus subsp. pastoris subspecies 1 Prochlorococcus marinus subsp. marinus subspecies 1 Prochlorococcus sp. W6 species 1 Pleurocapsales order 1 Chroococcidiopsis genus 1 Chroococcidiopsis sp. PCC 6712 species 5 Nostocales order 4 Nostocaceae family 1 Anabaena genus 1 Anabaena variabilis species 1 Trichormus genus 1 Trichormus azollae species 2 Nostoc genus 1 Nostoc sp. PCC 7120 species 1 Nostoc punctiforme species 1 Microchaetaceae family 1 Tolypothrix genus 1 Tolypothrix sp. PCC 7601 species 44 Oscillatoriophycideae subclass 7 Oscillatoriales order 1 Trichodesmium genus 1 Trichodesmium erythraeum species 3 Leptolyngbya genus 3 Leptolyngbya boryana species 3 Oscillatoria genus 1 Oscillatoria sancta species 2 Oscillatoria acuminata species 37 Chroococcales order 1 Thermosynechococcus genus 1 Thermosynechococcus elongatus species 3 Microcystis genus 3 Microcystis aeruginosa species 7 Cyanothece genus 1 Cyanothece sp. PCC 7425 species 1 Cyanothece sp. PCC 8801 species 1 Cyanothece sp. ATCC 51472 species 1 Cyanothece sp. PCC 7822 species 1 Cyanothece sp. PCC 7424 species 1 Cyanothece sp. ATCC 51142 species 1 Cyanothece sp. PCC 8802 species 1 Candidatus Atelocyanobacterium genus 1 Candidatus Atelocyanobacterium thalassa species 6 Synechocystis genus 6 Synechocystis sp. PCC 6803 species 1 Acaryochloris genus 1 Acaryochloris marina species 1 Crocosphaera genus 1 Crocosphaera watsonii species 13 Synechococcus genus 1 Synechococcus sp. WH 7803 species 2 Synechococcus sp. JA-3-3Ab species 1 Synechococcus sp. RCC307 species 1 Synechococcus sp. PCC 7002 species 1 Synechococcus sp. WH 8102 species 1 Synechococcus sp. JA-2-3B'a(2-13) species 1 Synechococcus sp. CC9605 species 1 Synechococcus sp. CC9902 species 3 Synechococcus elongatus species 1 Synechococcus sp. CC9311 species 4 Cyanobium genus 1 Cyanobium sp. PCC 6904 species 1 Cyanobium sp. PCC 7009 species 2 Cyanobium gracile species 97 Tenericutes phylum 97 Mollicutes class 1 Entomoplasmatales order 1 Entomoplasmataceae family 1 Mesoplasma genus 1 Mesoplasma florum species 90 Mycoplasmatales order 90 Mycoplasmataceae family 19 Ureaplasma genus 14 Ureaplasma urealyticum species 5 Ureaplasma parvum species 71 Mycoplasma genus 1 Mycoplasma mobile species 1 Mycoplasma crocodyli species 3 Mycoplasma hyorhinis species 1 Mycoplasma pneumophila species 1 Mycoplasma arthritidis species 1 Mycoplasma penetrans species 7 Mycoplasma pneumoniae species 8 Mycoplasma mycoides group species group 3 Mycoplasma capricolum species 2 Mycoplasma capricolum subsp. capricolum subspecies 2 Mycoplasma leachii species 3 Mycoplasma mycoides species 1 Mycoplasma mycoides subsp. capri subspecies 2 Mycoplasma mycoides subsp. mycoides subspecies 2 Mycoplasma pulmonis species 1 Mycoplasma haemocanis species 1 Mycoplasma putrefaciens species 13 Mycoplasma gallisepticum species 11 Mycoplasma genitalium species 1 Mycoplasma synoviae species 3 Mycoplasma fermentans species 2 Mycoplasma agalactiae species 2 Mycoplasma conjunctivae species 2 Mycoplasma haemofelis species 3 Mycoplasma bovis species 1 Mycoplasma hominis species 6 Mycoplasma hyopneumoniae species 6 Acholeplasmatales order 6 Acholeplasmataceae family 5 Candidatus Phytoplasma genus 2 Candidatus Phytoplasma asteris species group 1 Aster yellows witches'-broom phytoplasma species 1 Onion yellows phytoplasma species 1 16SrX (Apple proliferation group) species group 1 Candidatus Phytoplasma mali species 2 16SrXII (Stolbur group) species group 2 Candidatus Phytoplasma australiense species 1 Acholeplasma genus 1 Acholeplasma laidlawii species 18 Thermotogae phylum 18 Thermotogae class 18 Thermotogales order 18 Thermotogaceae family 1 Kosmotoga genus 1 Kosmotoga olearia species 2 Fervidobacterium genus 1 Fervidobacterium pennivorans species 1 Fervidobacterium nodosum species 2 Thermosipho genus 1 Thermosipho africanus species 1 Thermosipho melanesiensis species 1 Marinitoga genus 1 Marinitoga piezophila species 1 Petrotoga genus 1 Petrotoga mobilis species 10 Thermotoga genus 1 Thermotoga sp. RQ2 species 1 Thermotoga naphthophila species 1 Thermotoga sp. EMP species 1 Thermotoga thermarum species 1 Thermotoga petrophila species 1 Thermotoga lettingae species 3 Thermotoga maritima species 1 Thermotoga neapolitana species 1 Mesotoga genus 1 Mesotoga prima species 9 Fusobacteria phylum 9 Fusobacteriia class 9 Fusobacteriales order 6 Fusobacteriaceae family 1 Ilyobacter genus 1 Ilyobacter polytropus species 5 Fusobacterium genus 5 Fusobacterium nucleatum species 2 Fusobacterium nucleatum subsp. nucleatum subspecies 2 Fusobacterium nucleatum subsp. polymorphum subspecies 1 Fusobacterium nucleatum subsp. vincentii subspecies 3 Leptotrichiaceae family 1 Streptobacillus genus 1 Streptobacillus moniliformis species 1 Leptotrichia genus 1 Leptotrichia buccalis species 1 Sebaldella genus 1 Sebaldella termitidis species 2 Elusimicrobia phylum 1 uncultured Termite group 1 bacterium species 1 Elusimicrobia class 1 Elusimicrobiales order 1 Elusimicrobiaceae family 1 Elusimicrobium genus 1 Elusimicrobium minutum species 1 Gemmatimonadetes phylum 1 Gemmatimonadetes class 1 Gemmatimonadales order 1 Gemmatimonadaceae family 1 Gemmatimonas genus 1 Gemmatimonas aurantiaca species 4 Deferribacteres phylum 4 Deferribacteres class 4 Deferribacterales order 4 Deferribacteraceae family 1 Denitrovibrio genus 1 Denitrovibrio acetiphilus species 1 Flexistipes genus 1 Flexistipes sinusarabici species 1 Deferribacter genus 1 Deferribacter desulfuricans species 1 Calditerrivibrio genus 1 Calditerrivibrio nitroreducens species 13 Nitrospirae phylum 13 Nitrospira class 13 Nitrospirales order 13 Nitrospiraceae family 1 Thermodesulfovibrio genus 1 Thermodesulfovibrio yellowstonii species 1 Nitrospira genus 1 Candidatus Nitrospira defluvii species 11 Leptospirillum genus 2 Leptospirillum sp. Group I species group 2 Leptospirillum ferrooxidans species 7 Leptospirillum sp. Group II species group 1 Leptospirillum sp. Group II 'C75' species 2 Leptospirillum rubarum species 4 Leptospirillum sp. Group II '5-way CG' species 2 Leptospirillum sp. Group III species group 1 Leptospirillum ferriphilum species 709 Actinobacteria phylum 709 Actinobacteria class 1 Acidimicrobidae subclass 1 Acidimicrobiales order 1 Acidimicrobineae suborder 1 Acidimicrobiaceae family 1 Acidimicrobium genus 1 Acidimicrobium ferrooxidans species 10 Coriobacteridae subclass 10 Coriobacteriales order 10 Coriobacterineae suborder 10 Coriobacteriaceae family 1 Slackia genus 1 Slackia heliotrinireducens species 1 Atopobium genus 1 Atopobium parvulum species 1 Cryptobacterium genus 1 Cryptobacterium curtum species 5 Eggerthella genus 1 Eggerthella lenta species 2 Eggerthella sp. 1_3_56FAA species 1 Eggerthella sp. HGA1 species 1 Eggerthella sp. YY7918 species 1 Olsenella genus 1 Olsenella uli species 1 Coriobacterium genus 1 Coriobacterium glomerans species 2 Rubrobacteridae subclass 1 Rubrobacterales order 1 Rubrobacterineae suborder 1 Rubrobacteraceae family 1 Rubrobacter genus 1 Rubrobacter xylanophilus species 1 Solirubrobacterales order 1 Conexibacteraceae family 1 Conexibacter genus 1 Conexibacter woesei species 696 Actinobacteridae subclass 635 Actinomycetales order 27 Streptomycineae suborder 27 Streptomycetaceae family 1 Kitasatospora genus 1 Kitasatospora setae species 26 Streptomyces genus 2 Streptomyces hygroscopicus species 2 Streptomyces hygroscopicus subsp. jinggangensis subspecies 2 Streptomyces coelicolor species 1 Streptomyces sp. PAMC26508 species 5 Streptomyces lividans species 2 Streptomyces griseus group species subgroup 2 Streptomyces griseus species 1 Streptomyces griseus subsp. griseus subspecies 1 Streptomyces venezuelae species 1 Streptomyces scabiei species 1 Streptomyces sp. SirexAA-E species 1 Streptomyces sp. DvalAA-83 species 2 Streptomyces cattleya species 1 Streptomyces bingchenggensis species 1 Streptomyces pratensis species 1 Streptomyces aureofaciens species 1 Streptomyces collinus species 1 Streptomyces violaceusniger species 3 Streptomyces avermitilis species 348 Corynebacterineae suborder 48 Corynebacteriaceae family 48 Corynebacterium genus 2 Corynebacterium aurimucosum species 14 Corynebacterium diphtheriae species 2 Corynebacterium urealyticum species 3 Corynebacterium ulcerans species 1 Corynebacterium kroppenstedtii species 3 Corynebacterium efficiens species 1 Corynebacterium resistens species 13 Corynebacterium pseudotuberculosis species 7 Corynebacterium glutamicum species 1 Corynebacterium jeikeium species 1 Corynebacterium variabile species 20 Nocardiaceae family 7 Nocardia genus 1 Nocardia farcinica species 1 Nocardia brasiliensis species 4 Nocardia asteroides species 1 Nocardia cyriacigeorgica species 13 Rhodococcus genus 1 Rhodococcus sp. DK17 species 1 Rhodococcus sp. JVH1 species 1 Rhodococcus sp. R04 species 1 Rhodococcus qingshengii species 1 Rhodococcus erythropolis species 4 Rhodococcus hoagii species 1 Rhodococcus pyridinivorans species 1 Rhodococcus jostii species 2 Rhodococcus opacus species 272 Mycobacteriaceae family 271 Mycobacterium genus 4 Mycobacterium flavescens species 1 Mycobacterium piscinum species 1 Mycobacterium sp. JLS species 4 Mycobacterium gordonae species 1 Mycobacterium rhodesiae species 1 Mycobacterium liflandii species 2 Mycobacterium ulcerans species 4 Mycobacterium scrofulaceum species 1 Mycobacterium sp. JDM601 species 4 Mycobacterium szulgai species 1 Mycobacterium sp. 012931 species 1 Mycobacterium chubuense species 3 Mycobacterium smegmatis species 4 Mycobacterium xenopi species 131 Mycobacterium tuberculosis complex species group 12 Mycobacterium bovis species 101 Mycobacterium tuberculosis species 5 Mycobacterium africanum species 4 Mycobacterium microti species 8 Mycobacterium canettii species 1 Mycobacterium orygis species 1 Mycobacterium monacense species 3 Mycobacterium gilvum species 1 Mycobacterium sp. KMS species 2 Mycobacterium vanbaalenii species 43 Mycobacterium chelonae group species group 4 Mycobacterium chelonae species 39 Mycobacterium abscessus subgroup species subgroup 39 Mycobacterium abscessus species 14 Mycobacterium abscessus subsp. bolletii subspecies 32 Mycobacterium avium complex (MAC) species group 1 Mycobacterium yongonense species 25 Mycobacterium avium species 1 Mycobacterium avium subsp. avium subspecies 23 Mycobacterium avium subsp. paratuberculosis subspecies 1 Mycobacterium chimaera species 4 Mycobacterium intracellulare species 1 Mycobacterium indicus pranii species 4 Mycobacterium kansasii species 7 Mycobacterium marinum species 1 Mycobacterium sp. MCS species 3 Mycobacterium parascrofulaceum species 1 Mycobacterium austroafricanum species 1 Mycobacterium sp. H4Y species 4 Mycobacterium malmoense species 4 Mycobacterium leprae species 1 Mycobacterium sp. MOTT36Y species 1 Amycolicicoccus genus 1 Amycolicicoccus subflavus species 1 Tsukamurellaceae family 1 Tsukamurella genus 1 Tsukamurella paurometabola species 1 Segniliparaceae family 1 Segniliparus genus 1 Segniliparus rotundus species 6 Gordoniaceae family 6 Gordonia genus 3 Gordonia polyisoprenivorans species 1 Gordonia bronchialis species 1 Gordonia rubripertincta species 1 Gordonia sp. KTR9 species 5 Streptosporangineae suborder 1 Thermomonosporaceae family 1 Thermomonospora genus 1 Thermomonospora curvata species 3 Nocardiopsaceae family 1 Thermobifida genus 1 Thermobifida fusca species 2 Nocardiopsis genus 1 Nocardiopsis dassonvillei species 1 Nocardiopsis dassonvillei subsp. dassonvillei subspecies 1 Nocardiopsis alba species 1 Streptosporangiaceae family 1 Streptosporangium genus 1 Streptosporangium roseum species 48 Micrococcineae suborder 1 Dermabacteraceae family 1 Brachybacterium genus 1 Brachybacterium faecium species 14 Micrococcaceae family 1 Renibacterium genus 1 Renibacterium salmoninarum species 2 Rothia genus 1 Rothia dentocariosa species 1 Rothia mucilaginosa species 1 Kocuria genus 1 Kocuria rhizophila species 2 Micrococcus genus 2 Micrococcus luteus species 8 Arthrobacter genus 2 Arthrobacter chlorophenolicus species 1 Arthrobacter arilaitensis species 1 Arthrobacter aurescens species 1 Arthrobacter sp. FB24 species 1 Arthrobacter sp. M2012083 species 1 Arthrobacter phenanthrenivorans species 1 Arthrobacter sp. Rue61a species 5 Microbacteriaceae family 1 Leifsonia genus 1 Leifsonia xyli species 1 Leifsonia xyli subsp. xyli subspecies 3 Clavibacter genus 3 Clavibacter michiganensis species 2 Clavibacter michiganensis subsp. michiganensis subspecies 1 Clavibacter michiganensis subsp. sepedonicus subspecies 1 Microbacterium genus 1 Microbacterium testaceum species 1 Dermacoccaceae family 1 Kytococcus genus 1 Kytococcus sedentarius species 1 Beutenbergiaceae family 1 Beutenbergia genus 1 Beutenbergia cavernae species 2 Promicromonosporaceae family 1 Xylanimonas genus 1 Xylanimonas cellulosilytica species 1 Isoptericola genus 1 Isoptericola variabilis species 1 Intrasporangiaceae family 1 Intrasporangium genus 1 Intrasporangium calvum species 1 Brevibacteriaceae family 1 Brevibacterium genus 1 Brevibacterium linens species 17 Tropheryma genus 17 Tropheryma whipplei species 3 Cellulomonadaceae family 3 Cellulomonas genus 1 [Cellvibrio] gilvus species 1 Cellulomonas flavigena species 1 Cellulomonas fimi species 1 Sanguibacteraceae family 1 Sanguibacter genus 1 Sanguibacter keddieii species 1 Jonesiaceae family 1 Jonesia genus 1 Jonesia denitrificans species 1 Kineosporiineae suborder 1 Kineosporiaceae family 1 Kineococcus genus 1 Kineococcus radiotolerans species 1 Glycomycineae suborder 1 Glycomycetaceae family 1 Stackebrandtia genus 1 Stackebrandtia nassauensis species 44 Micromonosporineae suborder 44 Micromonosporaceae family 2 Actinoplanes genus 1 Actinoplanes sp. SE50/110 species 1 Actinoplanes missouriensis species 1 Verrucosispora genus 1 Verrucosispora maris species 2 Micromonospora genus 1 Micromonospora aurantiaca species 1 Micromonospora sp. L5 species 39 Salinispora genus 35 Salinispora arenicola species 4 Salinispora tropica species 139 Propionibacterineae suborder 2 Nocardioidaceae family 1 Nocardioides genus 1 Nocardioides sp. JS614 species 1 Kribbella genus 1 Kribbella flavida species 137 Propionibacteriaceae family 1 Microlunatus genus 1 Microlunatus phosphovorus species 136 Propionibacterium genus 1 Propionibacterium sp. CC003-HC2 species 1 Propionibacterium sp. 409-HC1 species 1 Propionibacterium sp. 5_U_42AFAA species 1 Propionibacterium freudenreichii species 1 Propionibacterium freudenreichii subsp. shermanii subspecies 1 Propionibacterium sp. 434-HC2 species 1 Propionibacterium acidipropionici species 129 Propionibacterium acnes species 1 Propionibacterium propionicum species 9 Pseudonocardineae suborder 9 Pseudonocardiaceae family 1 Pseudonocardia genus 1 Pseudonocardia dioxanivorans species 3 Amycolatopsis genus 3 Amycolatopsis mediterranei species 2 Saccharopolyspora genus 2 Saccharopolyspora erythraea species 1 Thermobispora genus 1 Thermobispora bispora species 1 Saccharomonospora genus 1 Saccharomonospora viridis species 1 Actinosynnema genus 1 Actinosynnema mirum species 2 Actinomycineae suborder 2 Actinomycetaceae family 1 Arcanobacterium genus 1 Arcanobacterium haemolyticum species 1 Mobiluncus genus 1 Mobiluncus curtisii species 10 Frankineae suborder 1 Nakamurellaceae family 1 Nakamurella genus 1 Nakamurella multipartita species 1 Acidothermaceae family 1 Acidothermus genus 1 Acidothermus cellulolyticus species 5 Frankiaceae family 5 Frankia genus 1 Frankia alni species 1 Frankia sp. EAN1pec species 1 Frankia sp. EuI1c species 1 Frankia symbiont of Datisca glomerata species 1 Frankia sp. CcI3 species 3 Geodermatophilaceae family 1 Modestobacter genus 1 Modestobacter marinus species 1 Geodermatophilus genus 1 Geodermatophilus obscurus species 1 Blastococcus genus 1 Blastococcus saxobsidens species 1 Catenulisporineae suborder 1 Catenulisporaceae family 1 Catenulispora genus 1 Catenulispora acidiphila species 61 Bifidobacteriales order 61 Bifidobacteriaceae family 55 Bifidobacterium genus 2 Bifidobacterium adolescentis species 2 uncultured Bifidobacterium sp. species 26 Bifidobacterium longum species 13 Bifidobacterium longum subsp. longum subspecies 5 Bifidobacterium longum subsp. infantis subspecies 2 Bifidobacterium dentium species 6 Bifidobacterium bifidum species 1 Bifidobacterium breve species 14 Bifidobacterium animalis species 1 Bifidobacterium animalis subsp. animalis subspecies 13 Bifidobacterium animalis subsp. lactis subspecies 1 Bifidobacterium bifidum CAG:234 species 1 Bifidobacterium asteroides species 6 Gardnerella genus 6 Gardnerella vaginalis species 158 Chlamydiae/Verrucomicrobia group superphylum 153 Chlamydiae phylum 153 Chlamydiia class 153 Chlamydiales order 2 Parachlamydiaceae family 1 Parachlamydia genus 1 Parachlamydia acanthamoebae species 1 Candidatus Protochlamydia genus 1 Candidatus Protochlamydia amoebophila species 148 Chlamydiaceae family 145 Chlamydia genus 58 Chlamydia psittaci species 7 Chlamydia pneumoniae species 4 Chlamydia muridarum species 75 Chlamydia trachomatis species 1 Chlamydia pecorum species 3 Chlamydophila genus 1 Chlamydophila caviae species 1 Chlamydophila felis species 1 Chlamydophila abortus species 2 Waddliaceae family 2 Waddlia genus 2 Waddlia chondrophila species 1 Simkaniaceae family 1 Simkania genus 1 Simkania negevensis species 5 Verrucomicrobia phylum 2 Opitutae class 1 Puniceicoccales order 1 Puniceicoccaceae family 1 Coraliomargarita genus 1 Coraliomargarita akajimensis species 1 Opitutaceae family 1 Opitutus genus 1 Opitutus terrae species 1 Methylacidiphilales order 1 Methylacidiphilaceae family 1 Methylacidiphilum genus 1 Methylacidiphilum infernorum species 2 Verrucomicrobiae class 2 Verrucomicrobiales order 2 Verrucomicrobiaceae family 1 Akkermansia genus 1 Akkermansia muciniphila species 1 Verrucomicrobium genus 1 Verrucomicrobium spinosum species 11 Aquificae phylum 11 Aquificae class 2 Desulfurobacteriales order 2 Desulfurobacteriaceae family 1 Thermovibrio genus 1 Thermovibrio ammonificans species 1 Desulfurobacterium genus 1 Desulfurobacterium thermolithotrophum species 9 Aquificales order 6 Aquificaceae family 1 Hydrogenobaculum genus 1 Hydrogenobaculum sp. Y04AAS1 species 1 Thermocrinis genus 1 Thermocrinis albus species 2 Aquifex genus 2 Aquifex aeolicus species 2 Hydrogenobacter genus 2 Hydrogenobacter thermophilus species 3 Hydrogenothermaceae family 1 Persephonella genus 1 Persephonella marina species 2 Sulfurihydrogenibium genus 1 Sulfurihydrogenibium azorense species 1 Sulfurihydrogenibium sp. YO3AOP1 species 3 dechlorinating enrichment culture KB-1 species 4546 Proteobacteria phylum 245 delta/epsilon subdivisions subphylum 181 Epsilonproteobacteria class 1 Nautiliales order 1 Nautiliaceae family 1 Nautilia genus 1 Nautilia profundicola species 178 Campylobacterales order 1 Nitratifractor genus 1 Nitratifractor salsuginis species 92 Helicobacteraceae family 1 Sulfuricurvum genus 1 Sulfuricurvum kujiense species 87 Helicobacter genus 1 Helicobacter cinaedi species 1 Helicobacter acinonychis species 1 Helicobacter bizzozeronii species 75 Helicobacter pylori species 2 Helicobacter mustelae species 1 Helicobacter ganmani species 2 Helicobacter felis species 2 Helicobacter hepaticus species 2 Helicobacter cetorum species 2 Wolinella genus 2 Wolinella succinogenes species 2 Sulfurimonas genus 1 Sulfurimonas autotrophica species 1 Sulfurimonas denitrificans species 85 Campylobacteraceae family 4 Arcobacter genus 1 Arcobacter sp. L species 2 Arcobacter butzleri species 1 Arcobacter nitrofigilis species 2 Sulfurospirillum genus 1 Sulfurospirillum deleyianum species 1 Sulfurospirillum barnesii species 79 Campylobacter genus 7 Campylobacter fetus species 4 Campylobacter fetus subsp. venerealis subspecies 1 Campylobacter fetus subsp. fetus subspecies 1 Campylobacter hominis species 1 Campylobacter concisus species 1 Campylobacter lari species 10 Campylobacter coli species 1 Campylobacter upsaliensis species 57 Campylobacter jejuni species 51 Campylobacter jejuni subsp. jejuni subspecies 1 Campylobacter jejuni subsp. doylei subspecies 1 Campylobacter curvus species 1 Nitratiruptor genus 1 Nitratiruptor sp. SB155-2 species 1 Sulfurovum genus 1 Sulfurovum sp. NBC37-1 species 64 Deltaproteobacteria class 14 Desulfuromonadales order 1 Desulfuromonadaceae family 1 Desulfuromonas genus 1 Desulfuromonas acetoxidans species 2 Pelobacteraceae family 2 Pelobacter genus 1 Pelobacter propionicus species 1 Pelobacter carbinolicus species 11 Geobacteraceae family 11 Geobacter genus 3 Geobacter sulfurreducens species 1 Geobacter bemidjiensis species 1 Geobacter daltonii species 1 Geobacter sp. M18 species 1 Geobacter sp. M21 species 2 Geobacter metallireducens species 1 Geobacter uraniireducens species 1 Geobacter lovleyi species 4 Syntrophobacterales order 1 Syntrophobacteraceae family 1 Syntrophobacter genus 1 Syntrophobacter fumaroxidans species 3 Syntrophaceae family 1 Desulfomonile genus 1 Desulfomonile tiedjei species 1 Desulfobacca genus 1 Desulfobacca acetoxidans species 1 Syntrophus genus 1 Syntrophus aciditrophicus species 14 Myxococcales order 1 Nannocystineae suborder 1 Kofleriaceae family 1 Haliangium genus 1 Haliangium ochraceum species 1 Sorangiineae suborder 1 Polyangiaceae family 1 Sorangium genus 1 Sorangium cellulosum species 12 Cystobacterineae suborder 4 Anaeromyxobacteraceae family 4 Anaeromyxobacter genus 2 Anaeromyxobacter dehalogenans species 1 Anaeromyxobacter sp. Fw109-5 species 1 Anaeromyxobacter sp. K species 2 Cystobacteraceae family 2 Stigmatella genus 2 Stigmatella aurantiaca species 6 Myxococcaceae family 1 Corallococcus genus 1 Corallococcus coralloides species 5 Myxococcus genus 4 Myxococcus xanthus species 1 Myxococcus fulvus species 20 Desulfovibrionales order 1 Desulfomicrobiaceae family 1 Desulfomicrobium genus 1 Desulfomicrobium baculatum species 1 Desulfohalobiaceae family 1 Desulfohalobium genus 1 Desulfohalobium retbaense species 18 Desulfovibrionaceae family 6 Lawsonia genus 6 Lawsonia intracellularis species 12 Desulfovibrio genus 2 Desulfovibrio africanus species 1 Desulfovibrio africanus subsp. africanus subspecies 1 Desulfovibrio alaskensis species 1 Desulfovibrio aespoeensis species 2 Desulfovibrio desulfuricans species 1 Desulfovibrio desulfuricans subsp. desulfuricans subspecies 1 Desulfovibrio magneticus species 1 Desulfovibrio salexigens species 4 Desulfovibrio vulgaris species 1 Desulfarculales order 1 Desulfarculaceae family 1 Desulfarculus genus 1 Desulfarculus baarsii species 7 Desulfobacterales order 3 Desulfobulbaceae family 1 Desulfotalea genus 1 Desulfotalea psychrophila species 1 Desulfurivibrio genus 1 Desulfurivibrio alkaliphilus species 1 Desulfobulbus genus 1 Desulfobulbus propionicus species 4 Desulfobacteraceae family 1 Desulfococcus genus 1 Desulfococcus oleovorans species 1 Desulfobacterium genus 1 Desulfobacterium autotrophicum species 1 Desulfatibacillum genus 1 Desulfatibacillum alkenivorans species 1 Desulfobacula genus 1 Desulfobacula toluolica species 3 Bdellovibrionales order 1 Bacteriovoracaceae family 1 Bacteriovorax genus 1 Bacteriovorax marinus species 2 Bdellovibrionaceae family 2 Bdellovibrio genus 2 Bdellovibrio bacteriovorus species 1 Desulfurellales order 1 Desulfurellaceae family 1 Hippea genus 1 Hippea maritima species 631 Alphaproteobacteria class 1 Candidatus Puniceispirillum genus 1 Candidatus Puniceispirillum marinum species 1 alpha proteobacterium HIMB5 species 33 Rhodospirillales order 19 Acetobacteraceae family 4 Gluconobacter genus 4 Gluconobacter oxydans species 9 Acetobacter genus 9 Acetobacter pasteurianus species 8 Acetobacter pasteurianus subsp. pasteurianus subspecies 1 Komagataeibacter genus 1 Komagataeibacter medellinensis species 1 Granulibacter genus 1 Granulibacter bethesdensis species 2 Gluconacetobacter genus 2 Gluconacetobacter diazotrophicus species 2 Acidiphilium genus 1 Acidiphilium multivorum species 1 Acidiphilium cryptum species 14 Rhodospirillaceae family 3 Azospirillum genus 2 Azospirillum lipoferum species 1 Azospirillum brasilense species 1 Tistrella genus 1 Tistrella mobilis species 3 Magnetospirillum genus 1 Magnetospirillum magneticum species 2 Magnetospirillum magnetotacticum species 7 Rhodospirillum genus 1 Rhodospirillum photometricum species 1 Rhodospirillum centenum species 5 Rhodospirillum rubrum species 1 Parvularculales order 1 Parvularculaceae family 1 Parvularcula genus 1 Parvularcula bermudensis species 19 Sphingomonadales order 1 Erythrobacteraceae family 1 Erythrobacter genus 1 Erythrobacter litoralis species 18 Sphingomonadaceae family 1 Sphingopyxis genus 1 Sphingopyxis alaskensis species 7 Zymomonas genus 7 Zymomonas mobilis species 1 Zymomonas mobilis subsp. pomaceae subspecies 6 Zymomonas mobilis subsp. mobilis subspecies 3 Novosphingobium genus 1 Novosphingobium aromaticivorans species 1 Novosphingobium pentaromativorans species 1 Novosphingobium sp. PP1Y species 3 Sphingobium genus 1 Sphingobium chlorophenolicum species 1 Sphingobium japonicum species 1 Sphingobium sp. SYK-6 species 4 Sphingomonas genus 2 Sphingomonas wittichii species 1 Sphingomonas elodea species 1 Sphingomonas sp. YL-JM2C species 1 Polymorphum gilvum species 449 Rhizobiales order 13 Bartonellaceae family 13 Bartonella genus 3 Bartonella bacilliformis species 2 Bartonella tribocorum species 3 Bartonella quintana species 2 Bartonella henselae species 2 Bartonella clarridgeiae species 1 Bartonella grahamii species 323 Brucellaceae family 4 Ochrobactrum genus 4 Ochrobactrum anthropi species 319 Brucella genus 2 Brucella neotomae species 1 Brucella microti species 10 Brucella canis species 1 Brucella sp. UK5/01 species 2 Brucella sp. F96/2 species 7 Brucella pinnipedialis species 2 Brucella sp. 56/94 species 1 Brucella sp. UK1/97 species 9 Brucella ceti species 1 Brucella inopinata species 2 Brucella sp. F5/99 species 2 Brucella sp. NVSL 07-0026 species 1 Brucella sp. UK40/99 species 149 Brucella abortus species 1 Brucella sp. F23/97 species 65 Brucella melitensis species 1 Brucella sp. UK38/05 species 1 Brucella sp. F8/99 species 42 Brucella suis species 17 Brucella ovis species 2 Brucella sp. F5/06 species 1 Methylocystaceae family 1 Methylocystis genus 1 Methylocystis sp. SC2 species 6 Phyllobacteriaceae family 5 Mesorhizobium genus 1 Mesorhizobium opportunistum species 3 Mesorhizobium loti species 1 Mesorhizobium ciceri species 1 Chelativorans genus 1 Chelativorans sp. BNC1 species 1 Candidatus Hodgkinia genus 1 Candidatus Hodgkinia cicadicola species 4 Hyphomicrobiaceae family 2 Hyphomicrobium genus 1 Hyphomicrobium sp. MC1 species 1 Hyphomicrobium denitrificans species 1 Rhodomicrobium genus 1 Rhodomicrobium vannielii species 1 Pelagibacterium genus 1 Pelagibacterium halotolerans species 1 Rhodobiaceae family 1 Parvibaculum genus 1 Parvibaculum lavamentivorans species 59 Rhizobiaceae family 8 Rhizobium genus 1 Rhizobium phaseoli species 2 Rhizobium etli species 5 Rhizobium leguminosarum species 3 Candidatus Liberibacter genus 1 Candidatus Liberibacter solanacearum species 2 Candidatus Liberibacter asiaticus species 41 Sinorhizobium genus 10 Sinorhizobium fredii species 25 Sinorhizobium meliloti species 6 Sinorhizobium medicae species 7 Agrobacterium genus 1 Agrobacterium sp. H13-3 species 1 Agrobacterium sp. ATCC 31749 species 1 Agrobacterium vitis species 4 Agrobacterium tumefaciens complex species group 3 Agrobacterium tumefaciens species 1 Agrobacterium fabrum species 3 Xanthobacteraceae family 1 Xanthobacter genus 1 Xanthobacter autotrophicus species 1 Starkeya genus 1 Starkeya novella species 1 Azorhizobium genus 1 Azorhizobium caulinodans species 12 Methylobacteriaceae family 12 Methylobacterium genus 1 Methylobacterium nodulans species 1 Methylobacterium sp. 4-46 species 1 Methylobacterium populi species 2 Methylobacterium radiotolerans species 5 Methylobacterium extorquens group species group 5 Methylobacterium extorquens species 2 Methylobacterium sp. WSM2598 species 24 Bradyrhizobiaceae family 9 Rhodopseudomonas genus 9 Rhodopseudomonas palustris species 3 Nitrobacter genus 1 Nitrobacter winogradskyi species 1 Nitrobacter sp. Nb-311A species 1 Nitrobacter hamburgensis species 3 Oligotropha genus 3 Oligotropha carboxidovorans species 9 Bradyrhizobium genus 1 Bradyrhizobium sp. BTAi1 species 1 Bradyrhizobium sp. S23321 species 1 Bradyrhizobium diazoefficiens species 1 Bradyrhizobium sp. CCBAU 41267 species 4 Bradyrhizobium japonicum species 1 Bradyrhizobium sp. ORS 278 species 2 Beijerinckiaceae family 1 Beijerinckia genus 1 Beijerinckia indica species 1 Beijerinckia indica subsp. indica subspecies 1 Methylocella genus 1 Methylocella silvestris species 87 Rickettsiales order 51 Rickettsiaceae family 51 Rickettsieae tribe 49 Rickettsia genus 15 typhus group species group 3 Rickettsia typhi species 12 Rickettsia prowazekii species 4 belli group species group 2 Rickettsia bellii species 2 Rickettsia canadensis species 30 spotted fever group species group 1 Rickettsia montanensis species 1 Rickettsia felis species 2 Rickettsia conorii species 1 Rickettsia conorii subsp. indica subspecies 2 Rickettsia massiliae species 1 Candidatus Rickettsia amblyommii species 1 Rickettsia heilongjiangensis species 8 Rickettsia rickettsii species 1 Rickettsia peacockii species 1 Rickettsia rhipicephali species 2 Rickettsia australis species 3 Rickettsia sibirica subgroup species subgroup 3 Rickettsia sibirica species 1 Rickettsia sibirica subsp. sibirica subspecies 1 Rickettsia sibirica subsp. mongolitimonae subspecies 1 Rickettsia japonica species 1 Rickettsia philipii species 1 Rickettsia africae species 2 Rickettsia slovaca species 1 Rickettsia akari species 1 Rickettsia parkeri species 2 Orientia genus 2 Orientia tsutsugamushi species 1 Candidatus Midichloriaceae family 1 Candidatus Midichloria genus 1 Candidatus Midichloria mitochondrii species 35 Anaplasmataceae family 11 Wolbachieae tribe 11 Wolbachia genus 1 Wolbachia endosymbiont of Drosophila suzukii species 1 Wolbachia endosymbiont of Drosophila melanogaster species 1 Wolbachia endosymbiont of Brugia malayi species 1 Wolbachia endosymbiont of Onchocerca ochengi species 1 Wolbachia sp. wRi species 1 Wolbachia endosymbiont of Culex pipiens molestus species 3 Wolbachia endosymbiont of Culex quinquefasciatus species 1 Wolbachia endosymbiont of Drosophila simulans species 1 Wolbachia endosymbiont of Drosophila ananassae species 5 Ehrlichia genus 5 canis group species group 1 Ehrlichia canis species 1 Ehrlichia chaffeensis species 3 Ehrlichia ruminantium species 17 Anaplasma genus 10 Anaplasma marginale species 1 Anaplasma centrale species 6 phagocytophilum group species group 6 Anaplasma phagocytophilum species 2 Neorickettsia genus 1 Neorickettsia sennetsu species 1 Neorickettsia risticii species 8 Caulobacterales order 8 Caulobacteraceae family 1 Phenylobacterium genus 1 Phenylobacterium zucineum species 5 Caulobacter genus 1 Caulobacter segnis species 3 Caulobacter vibrioides species 1 Caulobacter sp. K31 species 1 Asticcacaulis genus 1 Asticcacaulis excentricus species 1 Brevundimonas genus 1 Brevundimonas subvibrioides species 1 Micavibrio genus 1 Micavibrio aeruginosavorus species 1 alpha proteobacterium HIMB59 species 1 Magnetococcales order 1 Magnetococcaceae family 1 Magnetococcus genus 1 Magnetococcus marinus species 2 Candidatus Pelagibacter genus 1 Candidatus Pelagibacter ubique species 1 Candidatus Pelagibacter sp. IMCC9063 species 26 Rhodobacterales order 3 Hyphomonadaceae family 1 Maricaulis genus 1 Maricaulis maris species 1 Hyphomonas genus 1 Hyphomonas neptunium species 1 Hirschia genus 1 Hirschia baltica species 23 Rhodobacteraceae family 2 Ruegeria genus 1 Ruegeria sp. TM1040 species 1 Ruegeria pomeroyi species 1 Paracoccus genus 1 Paracoccus denitrificans species 1 Jannaschia genus 1 Jannaschia sp. CCS1 species 9 Rhodobacter genus 1 Rhodobacter capsulatus species 7 Rhodobacter sphaeroides species 1 Rhodobacter sp. AKP1 species 1 Dinoroseobacter genus 1 Dinoroseobacter shibae species 2 Phaeobacter genus 1 Phaeobacter inhibens species 1 Phaeobacter gallaeciensis species 2 Roseobacter genus 1 Roseobacter litoralis species 1 Roseobacter denitrificans species 3 Pseudovibrio genus 1 Pseudovibrio sp. FO-BEG1 species 2 Pseudovibrio sp. JE062 species 2 Ketogulonicigenium genus 2 Ketogulonicigenium vulgare species 3231 Gammaproteobacteria class 95 Pasteurellales order 95 Pasteurellaceae family 2 Histophilus genus 2 Histophilus somni species 14 Aggregatibacter genus 3 Aggregatibacter aphrophilus species 11 Aggregatibacter actinomycetemcomitans species 19 Actinobacillus genus 1 Actinobacillus succinogenes species 16 Actinobacillus pleuropneumoniae species 1 Actinobacillus suis species 1 Actinobacillus capsulatus species 1 Gallibacterium genus 1 Gallibacterium anatis species 12 Pasteurella genus 12 Pasteurella multocida species 5 Pasteurella multocida subsp. multocida subspecies 1 Basfia genus 1 Mannheimia succiniciproducens species 11 Mannheimia genus 11 Mannheimia haemolytica species 35 Haemophilus genus 1 Haemophilus parainfluenzae species 5 Haemophilus ducreyi species 4 Haemophilus parasuis species 2 Haemophilus aegyptius species 23 Haemophilus influenzae species 26 Aeromonadales order 26 Aeromonadaceae family 1 Tolumonas genus 1 Tolumonas auensis species 24 Aeromonas genus 9 Aeromonas salmonicida species 5 Aeromonas salmonicida subsp. salmonicida subspecies 1 Aeromonas salmonicida subsp. achromogenes subspecies 10 Aeromonas veronii species 5 Aeromonas hydrophila species 1 Aeromonas hydrophila subsp. hydrophila subspecies 1 Oceanimonas genus 1 Oceanimonas sp. GK1 species 4 Cardiobacteriales order 4 Cardiobacteriaceae family 4 Dichelobacter genus 4 Dichelobacter nodosus species 3 Methylococcales order 3 Methylococcaceae family 1 Methylomicrobium genus 1 Methylomicrobium alcaliphilum species 1 Methylomonas genus 1 Methylomonas methanica species 1 Methylococcus genus 1 Methylococcus capsulatus species 3 Simiduia genus 3 Simiduia agarivorans species 1 Candidatus Ruthia magnifica species 28 Legionellales order 18 Legionellaceae family 18 Legionella genus 16 Legionella pneumophila species 9 Legionella pneumophila subsp. pneumophila subspecies 2 Legionella longbeachae species 10 Coxiellaceae family 10 Coxiella genus 10 Coxiella burnetii species 67 Alteromonadales order 1 Colwelliaceae family 1 Colwellia genus 1 Colwellia psychrerythraea species 1 Ferrimonadaceae family 1 Ferrimonas genus 1 Ferrimonas balearica species 7 Pseudoalteromonadaceae family 7 Pseudoalteromonas genus 2 Pseudoalteromonas undina species 2 Pseudoalteromonas haloplanktis species 1 Pseudoalteromonas sp. PAMC 22718 species 1 Pseudoalteromonas sp. SM9913 species 1 Pseudoalteromonas atlantica species 28 Shewanellaceae family 28 Shewanella genus 10 Shewanella baltica species 1 Shewanella sp. W3-18-1 species 1 Shewanella piezotolerans species 1 Shewanella sediminis species 1 Shewanella oneidensis species 3 Shewanella putrefaciens species 1 Shewanella halifaxensis species 1 Shewanella frigidimarina species 1 Shewanella denitrificans species 1 Shewanella violacea species 1 Shewanella woodyi species 1 Shewanella pealeana species 1 Shewanella loihica species 1 Shewanella sp. ANA-3 species 1 Shewanella sp. MR-4 species 1 Shewanella amazonensis species 1 Shewanella sp. MR-7 species 3 Idiomarinaceae family 3 Idiomarina genus 1 Idiomarina sp. 28-8 species 2 Idiomarina loihiensis species 1 Teredinibacter genus 1 Teredinibacter turnerae species 1 Psychromonadaceae family 1 Psychromonas genus 1 Psychromonas ingrahamii species 25 Alteromonadaceae family 6 Marinobacter genus 1 Marinobacter sp. BSs20148 species 1 Marinobacter adhaerens species 4 Marinobacter hydrocarbonoclasticus species 16 Alteromonas genus 1 Alteromonas sp. SN2 species 1 uncultured Alteromonas sp. AD1000-G16-5 species 1 uncultured Alteromonas sp. AD1000-50-E05 species 13 Alteromonas macleodii species 1 Saccharophagus genus 1 Saccharophagus degradans species 2 Glaciecola genus 1 Glaciecola sp. 4H-3-7+YE-5 species 1 Glaciecola nitratireducens species 136 Xanthomonadales order 136 Xanthomonadaceae family 9 Stenotrophomonas genus 9 Stenotrophomonas maltophilia species 114 Xanthomonas genus 1 Xanthomonas euvesicatoria species 7 Xanthomonas citri group species group 5 Xanthomonas citri species 1 Xanthomonas citri subsp. citri subspecies 2 Xanthomonas fuscans species 2 Xanthomonas fuscans subsp. aurantifolii subspecies 1 Xanthomonas alfalfae species 1 Xanthomonas alfalfae subsp. citrumelonis subspecies 1 Xanthomonas albilineans species 6 Xanthomonas oryzae species 68 Xanthomonas axonopodis species 30 Xanthomonas campestris species 2 Pseudoxanthomonas genus 1 Pseudoxanthomonas spadix species 1 Pseudoxanthomonas suwonensis species 10 Xylella genus 10 Xylella fastidiosa species 1 Xylella fastidiosa subsp. multiplex subspecies 2 Xylella fastidiosa subsp. sandyi subspecies 1 Xylella fastidiosa subsp. fastidiosa subspecies 1 Frateuria genus 1 Frateuria aurantia species 2049 Enterobacteriales order 2049 Enterobacteriaceae family 6 Edwardsiella genus 2 Edwardsiella ictaluri species 1 Edwardsiella piscicida species 3 Edwardsiella tarda species 5 Xenorhabdus genus 1 Xenorhabdus nematophila species 4 Xenorhabdus bovienii species 1 secondary endosymbiont of Heteropsylla cubana species 13 Cronobacter genus 1 Cronobacter muytjensii species 8 Cronobacter sakazakii species 1 Cronobacter turicensis species 3 Cronobacter malonaticus species 17 Erwinia genus 1 Erwinia tasmaniensis species 1 Erwinia billingiae species 1 Erwinia sp. Ejp617 species 2 Erwinia pyrifoliae species 12 Erwinia amylovora species 15 Enterobacter genus 9 Enterobacter cloacae complex species group 1 Enterobacter asburiae species 1 Enterobacter lignolyticus species 7 Enterobacter cloacae species 2 Enterobacter cloacae subsp. cloacae subspecies 1 Enterobacter cloacae subsp. dissolvens subspecies 1 Enterobacter sp. 638 species 2 Enterobacter aerogenes species 1 Enterobacter sp. SST3 species 2 Enterobacter cancerogenus species 121 Klebsiella genus 1 Klebsiella sp. 1_1_55 species 1 Klebsiella variicola species 2 Klebsiella sp. MS 92-3 species 4 Klebsiella oxytoca species 2 Klebsiella sp. KTE92 species 109 Klebsiella pneumoniae species 2 Klebsiella pneumoniae subsp. rhinoscleromatis subspecies 48 Klebsiella pneumoniae subsp. pneumoniae subspecies 1 Klebsiella variicola CAG:634 species 1 Klebsiella sp. 4_1_44FAA species 1 Candidatus Riesia genus 1 Candidatus Riesia pediculicola species 3 Candidatus Blochmannia genus 1 Candidatus Blochmannia floridanus species 1 Candidatus Blochmannia pennsylvanicus species 1 Candidatus Blochmannia vafer species 1 Sodalis genus 1 Sodalis glossinidius species 2 Shimwellia genus 2 Shimwellia blattae species 401 Salmonella genus 399 Salmonella enterica species 3 Salmonella enterica subsp. arizonae subspecies 394 Salmonella enterica subsp. enterica subspecies 2 Salmonella bongori species 3 Providencia genus 1 Providencia rettgeri species 2 Providencia stuartii species 9 Pectobacterium genus 3 Pectobacterium atrosepticum species 2 Pectobacterium wasabiae species 1 Pectobacterium sp. SCC3193 species 3 Pectobacterium carotovorum species 3 Pectobacterium carotovorum subsp. carotovorum subspecies 2 Candidatus Moranella genus 2 Candidatus Moranella endobia species 10 Pantoea genus 1 Pantoea sp. At-9b species 1 Pantoea vagans species 6 Pantoea ananatis species 1 Pantoea sp. B40 species 1 Pantoea stewartii species 1 Pantoea stewartii subsp. stewartii subspecies 49 Shigella genus 2 Shigella sp. D9 species 7 Shigella sonnei species 6 Shigella dysenteriae species 28 Shigella flexneri species 6 Shigella boydii species 15 Buchnera genus 14 Buchnera aphidicola species 1 Buchnera sp. species 2 Wigglesworthia genus 2 Wigglesworthia glossinidia species 13 Serratia genus 1 Serratia sp. S4 species 2 Serratia marcescens species 6 Serratia plymuthica species 1 Serratia symbiotica species 1 Serratia proteamaculans species 1 Serratia sp. AS12 species 1 Serratia sp. AS13 species 1064 Escherichia genus 1 Escherichia sp. TW15838 species 1 Escherichia coli CAG:4 species 2 Escherichia albertii species 1054 Escherichia coli species 1 Escherichia sp. TW10509 species 1 Escherichia sp. 1_1_43 species 4 Escherichia fergusonii species 1 Candidatus Hamiltonella genus 1 Candidatus Hamiltonella defensa species 262 Yersinia genus 2 Yersinia rohdei species 12 Yersinia pseudotuberculosis species 217 Yersinia pestis species 1 Yersinia pestis subsp. microtus subspecies 20 Yersinia pestis subsp. pestis subspecies 2 Yersinia mollaretii species 1 Yersinia frederiksenii species 1 Yersinia intermedia species 2 Yersinia bercovieri species 25 Yersinia enterocolitica species 2 Yersinia enterocolitica subsp. enterocolitica subspecies 10 Yersinia enterocolitica subsp. palearctica subspecies 2 Citrobacter genus 1 Citrobacter rodentium species 1 Citrobacter koseri species 3 Rahnella genus 1 Rahnella sp. Y9602 species 2 Rahnella aquatilis species 5 Photorhabdus genus 3 Photorhabdus luminescens species 2 Photorhabdus luminescens subsp. laumondii subspecies 2 Photorhabdus asymbiotica species 1 Photorhabdus asymbiotica subsp. asymbiotica subspecies 15 Dickeya genus 8 Dickeya zeae species 1 Erwinia chrysanthemi species 2 Dickeya paradisiaca species 4 Dickeya dadantii species 8 Proteus genus 1 Proteus vulgaris species 7 Proteus mirabilis species 18 Oceanospirillales order 1 Hahellaceae family 1 Hahella genus 1 Hahella chejuensis species 11 Halomonadaceae family 4 Candidatus Portiera genus 4 Candidatus Portiera aleyrodidarum species 5 Candidatus Carsonella genus 5 Candidatus Carsonella ruddii species 1 Chromohalobacter genus 1 Chromohalobacter salexigens species 1 Halomonas genus 1 Halomonas elongata species 3 Alcanivoracaceae family 2 Alcanivorax genus 1 Alcanivorax dieselolei species 1 Alcanivorax borkumensis species 1 Kangiella genus 1 Kangiella koreensis species 3 Oceanospirillaceae family 3 Marinomonas genus 1 Marinomonas sp. MWYL1 species 1 Marinomonas mediterranea species 1 Marinomonas posidonica species 474 Pseudomonadales order 221 Pseudomonadaceae family 1 Cellvibrio genus 1 Cellvibrio japonicus species 3 Azotobacter group subfamily 3 Azotobacter genus 3 Azotobacter vinelandii species 217 Pseudomonas genus 6 Pseudomonas chlororaphis group species group 6 Pseudomonas chlororaphis species 3 Pseudomonas chlororaphis subsp. aureofaciens subspecies 1 Pseudomonas chlororaphis subsp. chlororaphis subspecies 8 Pseudomonas stutzeri group species group 8 Pseudomonas stutzeri subgroup species subgroup 8 Pseudomonas stutzeri species 1 Pseudomonas brassicacearum species 1 Pseudomonas brassicacearum subsp. brassicacearum subspecies 2 Pseudomonas sp. 2_1_26 species 1 Pseudomonas sp. P179 species 19 Pseudomonas putida group species group 18 Pseudomonas putida species 1 Pseudomonas fulva species 1 Pseudomonas sp. GM17 species 76 Pseudomonas syringae group species group 2 Pseudomonas avellanae species 5 Pseudomonas syringae group genomosp. 3 species 17 Pseudomonas syringae group genomosp. 2 species subgroup 9 Pseudomonas amygdali species 8 Pseudomonas savastanoi species 52 Pseudomonas syringae group genomosp. 1 species subgroup 52 Pseudomonas syringae species 73 Pseudomonas aeruginosa group species group 70 Pseudomonas aeruginosa species 3 Pseudomonas mendocina species 27 Pseudomonas fluorescens group species group 3 Pseudomonas tolaasii species 2 Pseudomonas synxantha species 20 Pseudomonas fluorescens species 2 Pseudomonas protegens species 1 Pseudomonas sp. GM25 species 1 Pseudomonas entomophila species 1 Pseudomonas sp. CF150 species 253 Moraxellaceae family 4 Psychrobacter genus 1 Psychrobacter sp. PRwf-1 species 1 Psychrobacter arcticus species 1 Psychrobacter urativorans species 1 Psychrobacter cryohalolentis species 3 Moraxella genus 3 Branhamella subgenus 3 Moraxella catarrhalis species 246 Acinetobacter genus 1 Acinetobacter sp. ADP1 species 2 Acinetobacter baylyi species 1 Acinetobacter sp. GG2 species 1 Acinetobacter sp. TG2027 species 1 Acinetobacter sp. 528 species 1 Acinetobacter oleivorans species 2 Acinetobacter sp. NIPH 817 species 1 Acinetobacter sp. NCTC 10304 species 236 Acinetobacter calcoaceticus/baumannii complex species group 10 Acinetobacter pittii species 213 Acinetobacter baumannii species 3 Acinetobacter calcoaceticus species 2 Acinetobacter calcoaceticus subsp. anitratus subspecies 9 Acinetobacter nosocomialis species 1 Acinetobacter sp. TG27347 species 1 uncultured marine gamma proteobacterium EBAC20E09 species 1 gamma proteobacterium HdN1 species 258 Vibrionales order 258 Vibrionaceae family 5 Photobacterium genus 1 Photobacterium phosphoreum species 4 Photobacterium profundum species 6 Aliivibrio genus 1 Aliivibrio salmonicida species 1 Aliivibrio logei species 4 Aliivibrio fischeri species 247 Vibrio genus 2 Vibrio splendidus species 3 Vibrio anguillarum species 3 Vibrio vulnificus species 2 Vibrio furnissii species 3 Vibrio sp. Ex25 species 4 Vibrio crassostreae species 1 Vibrio sp. RC341 species 1 Vibrio sp. RC586 species 18 Vibrio harveyi group species group 4 Vibrio campbellii species 2 Vibrio natriegens species 1 Vibrio alginolyticus species 11 Vibrio parahaemolyticus species 1 Vibrio sp. EJY3 species 4 Vibrio ordalii species 205 Vibrio cholerae species 1 Calyptogena okutanii thioautotrophic gill symbiont species 46 Thiotrichales order 41 Francisellaceae family 41 Francisella genus 1 Francisella noatunensis species 1 Francisella noatunensis subsp. orientalis subspecies 1 Francisella philomiragia species 38 Francisella tularensis species 1 Francisella tularensis subsp. mediasiatica subspecies 9 Francisella tularensis subsp. holarctica subspecies 6 Francisella tularensis subsp. novicida subspecies 21 Francisella tularensis subsp. tularensis subspecies 1 Francisella sp. TX077308 species 5 Piscirickettsiaceae family 1 Thiomicrospira genus 1 Thiomicrospira crunogena species 1 Cycloclasticus genus 1 Cycloclasticus sp. P1 species 1 Thioalkalimicrobium genus 1 Thioalkalimicrobium cyclicum species 2 Methylophaga genus 1 Methylophaga frappieri species 1 Methylophaga nitratireducenticrescens species 13 Chromatiales order 5 Ectothiorhodospiraceae family 1 Alkalilimnicola genus 1 Alkalilimnicola ehrlichii species 1 Halorhodospira genus 1 Halorhodospira halophila species 3 Thioalkalivibrio genus 1 Thioalkalivibrio sp. K90mix species 1 Thioalkalivibrio sp. HL-Eb18 species 1 Thioalkalivibrio sulfidiphilus species 7 Chromatiaceae family 1 Allochromatium genus 1 Allochromatium vinosum species 5 Nitrosococcus genus 1 Nitrosococcus halophilus species 1 Nitrosococcus watsonii species 3 Nitrosococcus oceani species 1 Thiocystis genus 1 Thiocystis violascens species 1 Halothiobacillaceae family 1 Halothiobacillus genus 1 Halothiobacillus neapolitanus species 6 Acidithiobacillales order 6 Acidithiobacillaceae family 6 Acidithiobacillus genus 1 Acidithiobacillus sp. GGI-221 species 2 Acidithiobacillus caldus species 1 Acidithiobacillus ferrivorans species 2 Acidithiobacillus ferrooxidans species 1 Candidatus Baumannia cicadellinicola species 439 Betaproteobacteria class 7 Methylophilales order 7 Methylophilaceae family 2 Methylovorus genus 1 Methylovorus glucosotrophus species 1 Methylovorus sp. MP688 species 3 Methylobacillus genus 1 Methylobacillus flagellatus species 2 Methylobacillus glycogenes species 2 Methylotenera genus 1 Methylotenera mobilis species 1 Methylotenera versatilis species 214 Burkholderiales order 34 Alcaligenaceae family 1 Pusillimonas genus 1 Pusillimonas sp. T7-7 species 24 Bordetella genus 10 Bordetella pertussis species 3 Bordetella parapertussis species 1 Bordetella avium species 2 Bordetella petrii species 8 Bordetella bronchiseptica species 3 Taylorella genus 2 Taylorella equigenitalis species 1 Taylorella asinigenitalis species 3 Alcaligenes genus 2 Alcaligenes faecalis species 1 Alcaligenes viscolactis S-2 species 1 Advenella genus 1 Advenella kashmirensis species 2 Achromobacter genus 2 Achromobacter xylosoxidans species 1 Leptothrix genus 1 Leptothrix cholodnii species 1 Methylibium genus 1 Methylibium petroleiphilum species 6 Oxalobacteraceae family 1 Herminiimonas genus 1 Herminiimonas arsenicoxydans species 1 Collimonas genus 1 Collimonas fungivorans species 2 Herbaspirillum genus 2 Herbaspirillum seropedicae species 1 Candidatus Zinderia genus 1 Candidatus Zinderia insecticola species 1 Janthinobacterium genus 1 Janthinobacterium sp. Marseille species 2 Thiomonas genus 1 Thiomonas arsenitoxydans species 1 Thiomonas intermedia species 1 Rubrivivax genus 1 Rubrivivax gelatinosus species 142 Burkholderiaceae family 104 Burkholderia genus 1 Burkholderia xenovorans species 1 Burkholderia sp. CCGE1003 species 2 Burkholderia rhizoxinica species 1 Burkholderia sp. CCGE1002 species 17 Burkholderia cepacia complex species group 1 Burkholderia vietnamiensis species 1 Burkholderia cepacia species 2 Burkholderia multivorans species 4 Burkholderia ambifaria species 9 Burkholderia cenocepacia species 4 Burkholderia glumae species 1 Burkholderia phymatum species 1 Burkholderia sp. URHA0054 species 1 Burkholderia sp. KJ006 species 67 pseudomallei group species group 47 Burkholderia pseudomallei species 6 Burkholderia thailandensis species 14 Burkholderia mallei species 1 Burkholderia phenoliruptrix species 1 Burkholderia phytofirmans species 1 Burkholderia graminis species 2 Burkholderia gladioli species 1 Burkholderia sp. CCGE1001 species 1 Burkholderia sp. JPY251 species 1 Burkholderia sp. YI23 species 14 Cupriavidus genus 1 Cupriavidus sp. HMR-1 species 3 Cupriavidus taiwanensis species 4 Cupriavidus necator species 1 Cupriavidus sp. WS species 1 Cupriavidus metallidurans species 3 Cupriavidus pinatubonensis species 1 Cupriavidus sp. amp6 species 2 Polynucleobacter genus 2 Polynucleobacter necessarius species 1 Polynucleobacter necessarius subsp. necessarius subspecies 1 Polynucleobacter necessarius subsp. asymbioticus subspecies 22 Ralstonia genus 2 Ralstonia sp. 5_2_56FAA species 2 Ralstonia sp. 5_7_47FAA species 1 Ralstonia sp. GA3-3 species 12 Ralstonia solanacearum species 5 Ralstonia pickettii species 27 Comamonadaceae family 2 Hydrogenophaga genus 2 Hydrogenophaga palleronii species 2 Polaromonas genus 1 Polaromonas naphthalenivorans species 1 Polaromonas sp. JS666 species 6 Variovorax genus 6 Variovorax paradoxus species 1 Verminephrobacter genus 1 Verminephrobacter eiseniae species 6 Acidovorax genus 1 Acidovorax avenae species 1 Acidovorax avenae subsp. avenae subspecies 1 Acidovorax sp. JS42 species 2 Acidovorax citrulli species 1 Acidovorax ebreus species 1 Acidovorax sp. KKS102 species 2 Ramlibacter genus 2 Ramlibacter tataouinensis species 2 Comamonas genus 2 Comamonas testosteroni species 3 Delftia genus 2 Delftia acidovorans species 1 Delftia sp. Cs1-4 species 1 Rhodoferax genus 1 Rhodoferax ferrireducens species 2 Alicycliphilus genus 2 Alicycliphilus denitrificans species 10 Rhodocyclales order 10 Rhodocyclaceae family 1 Aromatoleum genus 1 Aromatoleum aromaticum species 1 Azoarcus genus 1 Azoarcus sp. BH72 species 3 Dechloromonas genus 2 Dechloromonas agitata species 1 Dechloromonas aromatica species 2 Thauera genus 1 Thauera sp. MZ1T species 1 Thauera aminoaromatica species 3 Azospira genus 3 Azospira oryzae species 1 Candidatus Accumulibacter genus 1 Candidatus Accumulibacter phosphatis species 2 Gallionellales order 2 Gallionellaceae family 1 Sideroxydans genus 1 Sideroxydans lithotrophicus species 1 Gallionella genus 1 Gallionella capsiferriformans species 1 beta proteobacterium FWI2 species 187 Neisseriales order 6 Chromobacteriaceae family 2 Laribacter genus 2 Laribacter hongkongensis species 3 Chromobacterium genus 3 Chromobacterium violaceum species 1 Pseudogulbenkiania genus 1 Pseudogulbenkiania sp. NH8B species 181 Neisseriaceae family 181 Neisseria genus 146 Neisseria meningitidis species 2 Neisseria lactamica species 33 Neisseria gonorrhoeae species 8 Candidatus Tremblaya genus 8 Candidatus Tremblaya princeps species 8 Nitrosomonadales order 8 Nitrosomonadaceae family 7 Nitrosomonas genus 2 Nitrosomonas europaea species 1 Nitrosomonas sp. AL212 species 2 Nitrosomonas cryotolerans species 1 Nitrosomonas eutropha species 1 Nitrosomonas sp. Is79A3 species 1 Nitrosospira genus 1 Nitrosospira multiformis species 1 Hydrogenophilales order 1 Hydrogenophilaceae family 1 Thiobacillus genus 1 Thiobacillus denitrificans species 9 Planctomycetes phylum 1 Phycisphaerae class 1 Phycisphaerales order 1 Phycisphaeraceae family 1 Phycisphaera genus 1 Phycisphaera mikurensis species 8 Planctomycetia class 8 Planctomycetales order 8 Planctomycetaceae family 1 Gemmata genus 1 Gemmata obscuriglobus species 1 Pirellula genus 1 Pirellula staleyi species 3 Rhodopirellula genus 3 Rhodopirellula baltica species 1 Isosphaera genus 1 Isosphaera pallida species 2 Planctomyces genus 1 Planctomyces brasiliensis species 1 Planctomyces limnophilus species 209 Spirochaetes phylum 209 Spirochaetia class 209 Spirochaetales order 6 Brachyspiraceae family 6 Brachyspira genus 3 Brachyspira pilosicoli species 1 Brachyspira intermedia species 1 Brachyspira murdochii species 1 Brachyspira hyodysenteriae species 59 Spirochaetaceae family 22 Borrelia genus 1 Borrelia recurrentis species 1 Borrelia turicatae species 1 Borrelia hermsii species 17 Borrelia burgdorferi group species group 1 Borrelia bissettii species 1 Borrelia bavariensis species 4 Borrelia afzelii species 2 Borrelia garinii species 9 Borrelia burgdorferi species 1 Borrelia duttonii species 1 Borrelia crocidurae species 4 Spirochaeta genus 2 Spirochaeta thermophila species 1 Spirochaeta africana species 1 Spirochaeta smaragdinae species 30 Treponema genus 1 Treponema paraluiscuniculi species 1 Treponema brennaborense species 8 Treponema denticola species 1 Treponema caldaria species 1 Treponema succinifaciens species 1 Treponema primitia species 1 Treponema azotonutricium species 16 Treponema pallidum species 5 Treponema pallidum subsp. pertenue subspecies 9 Treponema pallidum subsp. pallidum subspecies 3 Sphaerochaeta genus 1 Sphaerochaeta pleomorpha species 1 Sphaerochaeta coccoides species 1 Sphaerochaeta globosa species 144 Leptospiraceae family 143 Leptospira genus 2 Leptospira biflexa species 5 Leptospira borgpetersenii species 136 Leptospira interrogans species 1 Turneriella genus 1 Turneriella parva species 4 Synergistetes phylum 4 Synergistia class 4 Synergistales order 4 Synergistaceae family 1 Anaerobaculum genus 1 Anaerobaculum mobile species 1 Aminobacterium genus 1 Aminobacterium colombiense species 1 Thermovirga genus 1 Thermovirga lienii species 1 Thermanaerovibrio genus 1 Thermanaerovibrio acidaminovorans species 2879 Firmicutes phylum 202 Clostridia class 36 Thermoanaerobacterales order 1 Thermoanaerobacterales Family IV. Incertae Sedis family 1 Mahella genus 1 Mahella australiensis species 2 Thermodesulfobiaceae family 1 Coprothermobacter genus 1 Coprothermobacter proteolyticus species 1 Thermodesulfobium genus 1 Thermodesulfobium narugense species 17 Thermoanaerobacteraceae family 2 Tepidanaerobacter genus 2 Tepidanaerobacter acetatoxydans species 9 Thermoanaerobacter genus 1 Thermoanaerobacter italicus species 1 Thermoanaerobacter sp. X513 species 1 Thermoanaerobacter pseudethanolicus species 1 Thermoanaerobacter ethanolicus species 1 Thermoanaerobacter wiegelii species 1 Thermoanaerobacter brockii species 1 Thermoanaerobacter brockii subsp. finnii subspecies 1 Thermoanaerobacter sp. X514 species 1 Thermoanaerobacter mathranii species 1 Thermoanaerobacter mathranii subsp. mathranii subspecies 1 Thermoanaerobacter sp. X561 species 1 Thermacetogenium genus 1 Thermacetogenium phaeum species 1 Moorella genus 1 Moorella thermoacetica species 2 Caldanaerobacter genus 2 Caldanaerobacter subterraneus species 1 Caldanaerobacter subterraneus subsp. pacificus subspecies 1 Caldanaerobacter subterraneus subsp. tengcongensis subspecies 1 Carboxydothermus genus 1 Carboxydothermus hydrogenoformans species 1 Ammonifex genus 1 Ammonifex degensii species 16 Thermoanaerobacterales Family III. Incertae Sedis family 4 Thermoanaerobacterium genus 2 Thermoanaerobacterium thermosaccharolyticum species 1 Thermoanaerobacterium xylanolyticum species 1 Thermoanaerobacterium saccharolyticum species 1 Thermosediminibacter genus 1 Thermosediminibacter oceani species 11 Caldicellulosiruptor genus 1 Caldicellulosiruptor kristjanssonii species 1 Caldicellulosiruptor owensensis species 4 Caldicellulosiruptor saccharolyticus species 1 Caldicellulosiruptor obsidiansis species 1 Caldicellulosiruptor hydrothermalis species 1 Caldicellulosiruptor lactoaceticus species 1 Caldicellulosiruptor kronotskyensis species 1 Caldicellulosiruptor bescii species 4 Halanaerobiales order 1 Halobacteroidaceae family 1 Acetohalobium genus 1 Acetohalobium arabaticum species 3 Halanaerobiaceae family 1 Halothermothrix genus 1 Halothermothrix orenii species 2 Halanaerobium genus 1 Halanaerobium praevalens species 1 Halanaerobium hydrogeniformans species 1 Natranaerobiales order 1 Natranaerobiaceae family 1 Natranaerobius genus 1 Natranaerobius thermophilus species 161 Clostridiales order 1 Clostridiales Family XVIII. Incertae Sedis family 1 Symbiobacterium genus 1 Symbiobacterium thermophilum species 1 Gottschalkia genus 1 Gottschalkia acidurici species 10 Ruminococcaceae family 7 Ruminiclostridium genus 1 [Clostridium] clariflavum species 6 Ruminiclostridium thermocellum species 1 Ethanoligenens genus 1 Ethanoligenens harbinense species 2 Ruminococcus genus 2 Ruminococcus albus species 2 Heliobacteriaceae family 1 Heliobacillus genus 1 Heliobacillus mobilis species 1 Heliobacterium genus 1 Heliobacterium modesticaldum species 2 Clostridiales Family XI. Incertae Sedis family 1 Anaerococcus genus 1 Anaerococcus prevotii species 1 Finegoldia genus 1 Finegoldia magna species 42 Peptostreptococcaceae family 41 Peptoclostridium genus 40 Peptoclostridium difficile species 1 [Clostridium] sticklandii species 1 Filifactor genus 1 Filifactor alocis species 5 Eubacteriaceae family 1 Acetobacterium genus 1 Acetobacterium woodii species 4 Eubacterium genus 1 Eubacterium rectale species 1 uncultured Eubacterium sp. species 1 [Eubacterium] eligens species 1 Eubacterium limosum species 63 Clostridiaceae family 10 Candidatus Arthromitus genus 1 Candidatus Arthromitus sp. SFB-1 species 1 Candidatus Arthromitus sp. SFB-rat-Yit species 1 Candidatus Arthromitus sp. SFB-4 species 1 Candidatus Arthromitus sp. SFB-5 species 1 Candidatus Arthromitus sp. SFB-2 species 1 Candidatus Arthromitus sp. SFB-co species 3 Candidatus Arthromitus sp. SFB-mouse species 1 Candidatus Arthromitus sp. SFB-mouse-SU species 50 Clostridium genus 3 Clostridium acetobutylicum species 1 Clostridium ljungdahlii species 19 Clostridium botulinum species 1 Clostridium sp. SY8519 species 1 Clostridium autoethanogenum species 1 Clostridium tetani species 1 Clostridium sp. BNL1100 species 16 Clostridium perfringens species 1 Clostridium beijerinckii species 2 Clostridium cellulovorans species 1 Clostridium novyi species 2 Clostridium kluyveri species 1 [Clostridium] cellulolyticum species 3 Alkaliphilus genus 2 Alkaliphilus oremlandii species 1 Alkaliphilus metalliredigens species 5 Lachnospiraceae family 1 Butyrivibrio genus 1 Butyrivibrio proteoclasticus species 1 Roseburia genus 1 Roseburia hominis species 2 Lachnoclostridium genus 1 Lachnoclostridium phytofermentans species 1 [Clostridium] saccharolyticum species 1 Cellulosilyticum genus 1 Cellulosilyticum lentocellum species 2 Syntrophomonadaceae family 1 Syntrophomonas genus 1 Syntrophomonas wolfei species 1 Syntrophomonas wolfei subsp. wolfei subspecies 1 Syntrophothermus genus 1 Syntrophothermus lipocalidus species 1 Oscillospiraceae family 1 Oscillibacter genus 1 Oscillibacter valericigenes species 3 Clostridiales Family XVII. Incertae Sedis family 2 Sulfobacillus genus 2 Sulfobacillus acidophilus species 1 Thermaerobacter genus 1 Thermaerobacter marianensis species 23 Peptococcaceae family 6 Desulfosporosinus genus 2 Desulfosporosinus acidiphilus species 2 Desulfosporosinus orientis species 2 Desulfosporosinus meridiei species 6 Desulfitobacterium genus 1 Desulfitobacterium dehalogenans species 5 Desulfitobacterium hafniense species 5 Desulfotomaculum genus 1 Desulfotomaculum reducens species 1 Desulfotomaculum carboxydivorans species 1 Desulfotomaculum kuznetsovii species 1 Desulfotomaculum ruminis species 1 Desulfotomaculum acetoxidans species 1 Thermincola genus 1 Thermincola potens species 1 Pelotomaculum genus 1 Pelotomaculum thermopropionicum species 1 Syntrophobotulus genus 1 Syntrophobotulus glycolicus species 1 Candidatus Desulforudis genus 1 Candidatus Desulforudis audaxviator species 2 Dehalobacter genus 1 Dehalobacter sp. DCA species 1 Dehalobacter sp. CF species 1 Clostridiales genomosp. BVAB3 species 2660 Bacilli class 1466 Lactobacillales order 4 Carnobacteriaceae family 4 Carnobacterium genus 3 Carnobacterium maltaromaticum species 1 Carnobacterium sp. 17-4 species 37 Leuconostocaceae family 15 Oenococcus genus 15 Oenococcus oeni species 20 Leuconostoc genus 2 Leuconostoc pseudomesenteroides species 6 Leuconostoc mesenteroides species 3 Leuconostoc mesenteroides subsp. mesenteroides subspecies 3 Leuconostoc mesenteroides subsp. cremoris subspecies 1 Leuconostoc gasicomitatum species 4 Leuconostoc citreum species 2 Leuconostoc carnosum species 1 Leuconostoc sp. C2 species 1 Leuconostoc inhae species 2 Leuconostoc gelidum species 1 Leuconostoc lactis species 2 Weissella genus 2 Weissella koreensis species 807 Streptococcaceae family 778 Streptococcus genus 102 Streptococcus mutans species 1 Streptococcus salivarius CAG:79 species 5 Streptococcus salivarius species 5 Streptococcus anginosus group species group 1 Streptococcus constellatus species 1 Streptococcus constellatus subsp. pharyngis subspecies 4 Streptococcus intermedius species 9 Streptococcus thermophilus species 1 Streptococcus infantarius species 1 Streptococcus infantarius subsp. infantarius subspecies 3 Streptococcus parasanguinis species 2 Streptococcus equinus species 4 Streptococcus mitis species 1 Streptococcus oralis species 1 Streptococcus macedonicus species 1 Streptococcus criceti species 5 Streptococcus parauberis species 3 Streptococcus gallolyticus species 3 Streptococcus gallolyticus subsp. gallolyticus subspecies 266 Streptococcus pneumoniae species 2 Streptococcus pseudopneumoniae species 30 Streptococcus pyogenes species 1 Streptococcus sanguinis species 9 Streptococcus dysgalactiae group species group 5 Streptococcus dysgalactiae species 5 Streptococcus dysgalactiae subsp. equisimilis subspecies 4 Streptococcus equi species 3 Streptococcus equi subsp. zooepidemicus subspecies 1 Streptococcus equi subsp. equi subspecies 1 Streptococcus pasteurianus species 264 Streptococcus agalactiae species 60 Streptococcus suis species 1 Streptococcus gordonii species 1 Streptococcus uberis species 29 Lactococcus genus 1 Lactococcus raffinolactis species 17 Lactococcus lactis species 7 Lactococcus lactis subsp. cremoris subspecies 10 Lactococcus lactis subsp. lactis subspecies 1 Lactococcus plantarum species 10 Lactococcus garvieae species 503 Enterococcaceae family 2 Melissococcus genus 2 Melissococcus plutonius species 500 Enterococcus genus 212 Enterococcus faecium species 279 Enterococcus faecalis species 5 Enterococcus durans species 4 Enterococcus hirae species 1 Tetragenococcus genus 1 Tetragenococcus halophilus species 114 Lactobacillaceae family 112 Lactobacillus genus 5 Lactobacillus salivarius species 10 Lactobacillus acidophilus species 1 Lactobacillus kefiranofaciens species 1 Lactobacillus ruminis species 7 Lactobacillus fermentum species 7 Lactobacillus plantarum species 4 Lactobacillus plantarum subsp. plantarum subspecies 7 Lactobacillus gasseri species 8 Lactobacillus helveticus species 1 Lactobacillus amylovorus CAG:719 species 1 Lactobacillus gallinarum species 26 Lactobacillus casei group species group 11 Lactobacillus paracasei species 11 Lactobacillus paracasei subsp. paracasei subspecies 15 Lactobacillus casei species 2 Lactobacillus buchneri species 3 Lactobacillus sakei species 2 Lactobacillus sakei subsp. sakei subspecies 5 Lactobacillus johnsonii species 2 Lactobacillus brevis species 10 Lactobacillus rhamnosus species 1 Lactobacillus crispatus species 1 Lactobacillus amylovorus species 1 Lactobacillus sanfranciscensis species 8 Lactobacillus reuteri species 5 Lactobacillus delbrueckii species 5 Lactobacillus delbrueckii subsp. bulgaricus subspecies 2 Pediococcus genus 1 Pediococcus claussenii species 1 Pediococcus pentosaceus species 1 Aerococcaceae family 1 Aerococcus genus 1 Aerococcus urinae species 1194 Bacillales order 694 Staphylococcaceae family 1 Macrococcus genus 1 Macrococcus caseolyticus species 693 Staphylococcus genus 61 Staphylococcus epidermidis species 1 Staphylococcus carnosus species 1 Staphylococcus carnosus subsp. carnosus subspecies 618 Staphylococcus aureus species 182 Staphylococcus aureus subsp. aureus subspecies 1 Staphylococcus xylosus species 3 Staphylococcus pseudintermedius species 4 Staphylococcus lugdunensis species 1 Staphylococcus sp. JGI 0001002-I23 species 2 Staphylococcus saprophyticus species 1 Staphylococcus saprophyticus subsp. saprophyticus subspecies 1 Staphylococcus haemolyticus species 1 Staphylococcus sp. MDS7B species 3 Exiguobacterium genus 1 Exiguobacterium sp. AT1b species 1 Exiguobacterium sibiricum species 1 Exiguobacterium antarcticum species 1 Planococcaceae family 1 Solibacillus genus 1 Solibacillus silvestris species 88 Listeriaceae family 88 Listeria genus 2 Listeria welshimeri species 2 Listeria grayi species 4 Listeria seeligeri species 2 Listeria ivanovii species 1 Listeria ivanovii subsp. ivanovii subspecies 67 Listeria monocytogenes species 11 Listeria innocua species 391 Bacillaceae family 1 Amphibacillus genus 1 Amphibacillus xylanus species 2 Anoxybacillus genus 2 Anoxybacillus flavithermus species 1 Oceanobacillus genus 1 Oceanobacillus iheyensis species 12 Geobacillus genus 1 Geobacillus sp. Y412MC61 species 1 Geobacillus thermoglucosidasius species 1 Geobacillus sp. C56-T3 species 1 Geobacillus sp. Y4.1MC1 species 1 Geobacillus stearothermophilus species 1 Geobacillus sp. Y412MC52 species 1 Geobacillus sp. WCH70 species 1 Geobacillus thermoleovorans group species group 1 Geobacillus thermoleovorans species 2 Geobacillus kaustophilus species 1 Geobacillus thermodenitrificans species 1 Geobacillus sp. WSUCF1 species 1 Lysinibacillus genus 1 Lysinibacillus sphaericus species 373 Bacillus genus 1 Bacillus sp. species 1 Bacillus halodurans species 1 Bacillus sp. WBUNB004 species 290 Bacillus cereus group species group 2 Bacillus sp. 7_6_55CFAA_CT2 species 1 Bacillus weihenstephanensis species 214 Bacillus cereus species 2 Bacillus mycoides species 1 Bacillus cytotoxicus species 27 Bacillus anthracis species 43 Bacillus thuringiensis species 1 Bacillus sp. WBUNB009 species 1 Bacillus sp. 916 species 1 Bacillus cellulosilyticus species 65 Bacillus subtilis group species group 13 Bacillus amyloliquefaciens species 3 Bacillus amyloliquefaciens subsp. amyloliquefaciens subspecies 6 Bacillus amyloliquefaciens subsp. plantarum subspecies 16 Bacillus atrophaeus species 4 Bacillus atrophaeus subsp. globigii subspecies 3 Bacillus licheniformis species 33 Bacillus subtilis species 3 Bacillus subtilis subsp. spizizenii subspecies 1 Bacillus subtilis subsp. natto subspecies 18 Bacillus subtilis subsp. subtilis subspecies 1 Bacillus clausii species 1 Bacillus pumilus species 2 Bacillus coagulans species 5 Bacillus megaterium species 1 Bacillus sp. JS species 1 Bacillus sp. WBUNB001 species 1 Bacillus pseudofirmus species 1 Halobacillus genus 1 Halobacillus halophilus species 13 Paenibacillaceae family 12 Paenibacillus genus 3 Paenibacillus mucilaginosus species 1 Paenibacillus lentimorbus species 3 Paenibacillus polymyxa species 1 Paenibacillus macerans species 1 Paenibacillus larvae species 1 Paenibacillus larvae subsp. larvae subspecies 1 Paenibacillus sp. Y412MC10 species 1 Paenibacillus sp. JDR-2 species 1 Paenibacillus terrae species 1 Brevibacillus genus 1 Brevibacillus brevis species 3 Alicyclobacillaceae family 2 Alicyclobacillus genus 2 Alicyclobacillus acidocaldarius species 2 Alicyclobacillus acidocaldarius subsp. acidocaldarius subspecies 1 Kyrpidia genus 1 Kyrpidia tusciae species 1 Sporolactobacillaceae family 1 [Bacillus] selenitireducens species 15 Negativicutes class 15 Selenomonadales order 8 Acidaminococcaceae family 8 Acidaminococcus genus 1 Acidaminococcus fermentans species 2 Acidaminococcus sp. HPA0509 species 1 Acidaminococcus sp. D21 species 2 Acidaminococcus intestini species 2 Acidaminococcus intestini CAG:325 species 7 Veillonellaceae family 1 Veillonella genus 1 Veillonella parvula species 2 Megasphaera genus 1 Megasphaera elsdenii CAG:570 species 1 Megasphaera elsdenii species 4 Selenomonas genus 1 Selenomonas ruminantium species 1 Selenomonas ruminantium subsp. lactilytica subspecies 3 Selenomonas sputigena species 2 Erysipelotrichia class 2 Erysipelotrichales order 2 Erysipelotrichaceae family 2 Erysipelothrix genus 2 Erysipelothrix rhusiopathiae species 20 Chloroflexi phylum 1 Caldilineae class 1 Caldilineales order 1 Caldilineaceae family 1 Caldilinea genus 1 Caldilinea aerophila species 8 Chloroflexia class 2 Herpetosiphonales order 2 Herpetosiphonaceae family 2 Herpetosiphon genus 2 Herpetosiphon aurantiacus species 6 Chloroflexales order 2 Roseiflexineae suborder 2 Roseiflexaceae family 2 Roseiflexus genus 1 Roseiflexus sp. RS-1 species 1 Roseiflexus castenholzii species 4 Chloroflexineae suborder 4 Chloroflexaceae family 4 Chloroflexus genus 1 Chloroflexus aggregans species 2 Chloroflexus aurantiacus species 1 Chloroflexus sp. Y-400-fl species 8 Dehalococcoidia class 1 Dehalogenimonas genus 1 Dehalogenimonas lykanthroporepellens species 7 Dehalococcoidales order 7 Dehalococcoidaceae family 7 Dehalococcoides genus 6 Dehalococcoides mccartyi species 1 Dehalococcoides sp. enrichment culture clone WL_Dhc_01 species 1 Anaerolineae class 1 Anaerolineales order 1 Anaerolineaceae family 1 Anaerolinea genus 1 Anaerolinea thermophila species 2 Thermomicrobia class 1 Thermomicrobiales order 1 Thermomicrobiaceae family 1 Thermomicrobium genus 1 Thermomicrobium roseum species 1 Sphaerobacteridae subclass 1 Sphaerobacterales order 1 Sphaerobacterineae suborder 1 Sphaerobacteraceae family 1 Sphaerobacter genus 1 Sphaerobacter thermophilus species 1 Candidatus Methylomirabilis genus 1 Candidatus Methylomirabilis oxyfera species 1 Cloacimonetes phylum 1 Candidatus Cloacimonas genus 1 Candidatus Cloacimonas acidaminovorans species 2 Thermodesulfobacteria phylum 2 Thermodesulfobacteria class 2 Thermodesulfobacteriales order 2 Thermodesulfobacteriaceae family 1 Thermodesulfatator genus 1 Thermodesulfatator indicus species 1 Thermodesulfobacterium genus 1 Thermodesulfobacterium geofontis species 11 Fibrobacteres/Acidobacteria group superphylum 9 Acidobacteria phylum 1 Candidatus Chloracidobacterium genus 1 Candidatus Chloracidobacterium thermophilum species 6 Acidobacteriia class 6 Acidobacteriales order 6 Acidobacteriaceae family 1 Acidobacterium genus 1 Acidobacterium capsulatum species 3 Terriglobus genus 1 Terriglobus saanensis species 2 Terriglobus roseus species 2 Granulicella genus 1 Granulicella tundricola species 1 Granulicella mallensis species 1 Solibacteres class 1 Solibacterales order 1 Solibacteraceae family 1 Candidatus Solibacter genus 1 Candidatus Solibacter usitatus species 1 Candidatus Koribacter genus 1 Candidatus Koribacter versatilis species 2 Fibrobacteres phylum 2 Fibrobacteria class 2 Fibrobacterales order 2 Fibrobacteraceae family 2 Fibrobacter genus 2 Fibrobacter succinogenes species 2 Fibrobacter succinogenes subsp. succinogenes subspecies 137 Bacteroidetes/Chlorobi group superphylum 2 Ignavibacteriae phylum 2 Ignavibacteria class 2 Ignavibacteriales order 1 Melioribacteraceae family 1 Melioribacter genus 1 Melioribacter roseus species 1 Ignavibacteriaceae family 1 Ignavibacterium genus 1 Ignavibacterium album species 123 Bacteroidetes phylum 9 Sphingobacteriia class 9 Sphingobacteriales order 1 Chitinophaga genus 1 Chitinophaga pinensis species 5 Sphingobacteriaceae family 3 Pedobacter genus 2 Pedobacter heparinus species 1 Pedobacter saltans species 1 Solitalea genus 1 Solitalea canadensis species 1 Sphingobacterium genus 1 Sphingobacterium sp. 21 species 1 Niastella genus 1 Niastella koreensis species 2 Saprospiraceae family 1 Haliscomenobacter genus 1 Haliscomenobacter hydrossis species 1 Saprospira genus 1 Saprospira grandis species 4 Bacteroidetes Order II. Incertae sedis order 4 Rhodothermaceae family 2 Salinibacter genus 2 Salinibacter ruber species 2 Rhodothermus genus 2 Rhodothermus marinus species 55 Bacteroidia class 55 Bacteroidales order 2 Rikenellaceae family 2 Alistipes genus 1 Alistipes finegoldii species 1 Alistipes finegoldii CAG:68 species 23 Porphyromonadaceae family 1 Tannerella genus 1 Tannerella forsythia species 1 Paludibacter genus 1 Paludibacter propionicigenes species 9 Porphyromonas genus 8 Porphyromonas gingivalis species 1 Porphyromonas asaccharolytica species 9 Parabacteroides genus 1 Parabacteroides sp. D13 species 1 Parabacteroides sp. CAG:2 species 2 Parabacteroides sp. 20_3 species 5 Parabacteroides distasonis species 3 Odoribacter genus 1 Odoribacter splanchnicus species 2 Odoribacter splanchnicus CAG:14 species 1 Candidatus Azobacteroides genus 1 Candidatus Azobacteroides pseudotrichonymphae species 24 Bacteroidaceae family 24 Bacteroides genus 1 Bacteroides fragilis CAG:47 species 1 Bacteroides salanitronis species 2 Bacteroides sp. 2_1_16 species 2 Bacteroides sp. 3_2_5 species 1 Bacteroides thetaiotaomicron species 1 Bacteroides helcogenes species 14 Bacteroides fragilis species 1 Bacteroides sp. 3_1_19 species 1 Bacteroides vulgatus species 5 Prevotellaceae family 5 Prevotella genus 1 Prevotella denticola species 1 Prevotella melaninogenica species 2 Prevotella intermedia species 1 Prevotella ruminicola species 43 Flavobacteriia class 43 Flavobacteriales order 31 Flavobacteriaceae family 1 Croceibacter genus 1 Croceibacter atlanticus species 1 Aequorivita genus 1 Aequorivita sublithincola species 2 Cellulophaga genus 1 Cellulophaga lytica species 1 Cellulophaga algicola species 8 Riemerella genus 8 Riemerella anatipestifer species 1 Robiginitalea genus 1 Robiginitalea biformata species 5 Flavobacterium genus 1 Flavobacterium johnsoniae species 1 Flavobacterium branchiophilum species 1 Flavobacterium psychrophilum species 1 Flavobacterium indicum species 1 Flavobacterium columnare species 1 Flavobacteriaceae bacterium 3519-10 species 1 Gramella genus 1 Gramella forsetii species 2 Capnocytophaga genus 1 Capnocytophaga ochracea species 1 Capnocytophaga canimorsus species 1 Maribacter genus 1 Maribacter sp. HTCC2170 species 1 Weeksella genus 1 Weeksella virosa species 1 Ornithobacterium genus 1 Ornithobacterium rhinotracheale species 1 Psychroflexus genus 1 Psychroflexus torquis species 1 Zunongwangia genus 1 Zunongwangia profunda species 1 Zobellia genus 1 Zobellia galactanivorans species 1 Dokdonia genus 1 Dokdonia sp. 4H-3-7-5 species 1 Muricauda genus 1 Muricauda ruestringensis species 1 Lacinutrix genus 1 Lacinutrix sp. 5H-3-7-4 species 5 Candidatus Sulcia genus 5 Candidatus Sulcia muelleri species 5 Blattabacteriaceae family 5 Blattabacterium genus 1 Blattabacterium sp. (Blattella germanica) species 1 Blattabacterium punctulatus species 1 Blattabacterium sp. (Mastotermes darwiniensis) species 1 Blattabacterium sp. (Periplaneta americana) species 1 Blattabacterium sp. (Blaberus giganteus) species 2 Cryomorphaceae family 1 Fluviicola genus 1 Fluviicola taffensis species 1 Owenweeksia genus 1 Owenweeksia hongkongensis species 12 Cytophagia class 12 Cytophagales order 2 Cyclobacteriaceae family 1 Cyclobacterium genus 1 Cyclobacterium marinum species 1 Belliella genus 1 Belliella baltica species 7 Cytophagaceae family 1 Dyadobacter genus 1 Dyadobacter fermentans species 1 Leadbetterella genus 1 Leadbetterella byssophila species 1 Runella genus 1 Runella slithyformis species 1 Emticicia genus 1 Emticicia oligotrophica species 1 Spirosoma genus 1 Spirosoma linguale species 1 Flexibacter genus 1 Flexibacter litoralis species 1 Cytophaga genus 1 Cytophaga hutchinsonii species 2 Amoebophilaceae family 1 Candidatus Cardinium genus 1 Cardinium endosymbiont of Encarsia pergandiella species 1 Candidatus Amoebophilus genus 1 Candidatus Amoebophilus asiaticus species 1 Flammeovirgaceae family 1 Marivirga genus 1 Marivirga tractuosa species 12 Chlorobi phylum 12 Chlorobia class 12 Chlorobiales order 12 Chlorobiaceae family 1 Chloroherpeton genus 1 Chloroherpeton thalassium species 1 Prosthecochloris genus 1 Prosthecochloris aestuarii species 3 Chlorobaculum genus 2 Chlorobaculum tepidum species 1 Chlorobaculum parvum species 5 Chlorobium genus 1 Chlorobium limicola species 1 Chlorobium phaeovibrioides species 2 Chlorobium phaeobacteroides species 1 Chlorobium chlorochromatii species 2 Pelodictyon genus 1 Pelodictyon phaeoclathratiforme species 1 Pelodictyon luteolum species 28 Deinococcus-Thermus phylum 28 Deinococci class 20 Thermales order 20 Thermaceae family 5 Meiothermus genus 4 Meiothermus ruber species 1 Meiothermus silvanus species 13 Thermus genus 1 Thermus oshimai species 8 Thermus thermophilus species 2 Thermus scotoductus species 1 Thermus sp. CCB_US3_UF1 species 1 Thermus sp. RL species 1 Marinithermus genus 1 Marinithermus hydrothermalis species 1 Oceanithermus genus 1 Oceanithermus profundus species 8 Deinococcales order 1 Trueperaceae family 1 Truepera genus 1 Truepera radiovictrix species 7 Deinococcaceae family 7 Deinococcus genus 1 Deinococcus geothermalis species 2 Deinococcus radiodurans species 1 Deinococcus gobiensis species 1 Deinococcus proteolyticus species 1 Deinococcus deserti species 1 Deinococcus maricopensis species 1 Caldiserica phylum 1 Caldisericia class 1 Caldisericales order 1 Caldisericaceae family 1 Caldisericum genus 1 Caldisericum exile species 5 synthetic construct species 49 marine metagenome species 1 activated sludge metagenome species 4 mine drainage metagenome species 1 wasp metagenome species 2 food metagenome species 1 synthetic Mycoplasma genitalium JCVI-1.0 species 187 Eukaryota superkingdom 46 Metazoa kingdom 2 Cnidaria phylum 2 Anthozoa class 2 Hexacorallia subclass 1 Actiniaria order 1 Edwardsiidae family 1 Nematostella genus 1 Nematostella vectensis species 1 Scleractinia order 1 Astrocoeniina suborder 1 Acroporidae family 1 Acropora genus 1 Acropora millepora species 7 Nematoda phylum 7 Chromadorea class 1 Spirurida order 1 Filarioidea superfamily 1 Onchocercidae family 1 Brugia genus 1 Brugia malayi species 1 Diplogasterida order 1 Neodiplogasteridae family 1 Pristionchus genus 1 Pristionchus pacificus species 5 Rhabditida order 1 Strongylida suborder 1 Ancylostomatoidea superfamily 1 Ancylostomatidae family 1 Ancylostomatinae subfamily 1 Ancylostoma genus 1 Ancylostoma caninum species 3 Rhabditoidea superfamily 3 Rhabditidae family 2 Peloderinae subfamily 2 Caenorhabditis genus 2 Caenorhabditis remanei species 1 Mesorhabditinae subfamily 1 Mesorhabditis genus 1 Mesorhabditis sp. species 1 Panagrolaimoidea superfamily 1 Strongyloididae family 1 Strongyloides genus 1 Strongyloides ratti species 14 Chordata phylum 1 Tunicata subphylum 1 Ascidiacea class 1 Enterogona order 1 Phlebobranchia suborder 1 Cionidae family 1 Ciona genus 1 Ciona savignyi species 13 Craniata subphylum 1 Actinopterygii superclass 1 Actinopteri class 1 Neopterygii subclass 1 Teleostei infraclass 1 Cypriniphysae superorder 1 Cypriniformes order 1 Cyprinoidea superfamily 1 Cyprinidae family 1 Danio genus 1 Danio rerio species 2 Aves class 2 Neognathae superorder 1 Passeriformes order 1 Passeroidea superfamily 1 Fringillidae family 1 Emberizinae subfamily 1 Cardinalini tribe 1 Saltator genus 1 Saltator albicollis species 1 Gruiformes order 1 Rallidae family 1 Fulica genus 1 Fulica cristata species 10 Mammalia class 5 Euarchontoglires superorder 5 Primates order 5 Haplorrhini suborder 5 Simiiformes infraorder 5 Catarrhini parvorder 5 Hominoidea superfamily 5 Hominidae family 5 Homininae subfamily 5 Homo genus 5 Homo sapiens species 5 Laurasiatheria superorder 1 Carnivora order 1 Feliformia suborder 1 Felidae family 1 Felinae subfamily 1 Felis genus 1 Felis catus species 3 Ruminantia suborder 3 Pecora infraorder 3 Bovidae family 3 Antilopinae subfamily 3 Pantholops genus 3 Pantholops hodgsonii species 1 Chiroptera order 1 Megachiroptera suborder 1 Pteropodidae family 1 Pteropodinae subfamily 1 Aproteles genus 1 Aproteles bulmerae species 20 Arthropoda phylum 19 Hexapoda superclass 19 Insecta class 19 Neoptera subclass 3 Endopterygota infraclass 1 Coleoptera order 1 Polyphaga suborder 1 Cucujiformia infraorder 1 Curculionoidea superfamily 1 Curculionidae family 1 Dryophthorinae subfamily 1 Sitophilus genus 1 Sitophilus zeamais species 2 Diptera order 1 Nematocera suborder 1 Culicomorpha infraorder 1 Culicoidea superfamily 1 Culicidae family 1 Anophelinae subfamily 1 Anopheles genus 1 Cellia subgenus 1 Anopheles gambiae species 1 Brachycera suborder 1 Muscomorpha infraorder 1 Ephydroidea superfamily 1 Drosophilidae family 1 Drosophilinae subfamily 1 Drosophilini tribe 1 Drosophilina subtribe 1 Drosophila genus 1 Sophophora subgenus 1 melanogaster group species group 1 ananassae subgroup species subgroup 1 Drosophila ananassae species 16 Paraneoptera infraclass 16 Hemiptera order 16 Aphidoidea superfamily 16 Aphididae family 16 Aphidinae subfamily 16 Macrosiphini tribe 15 Acyrthosiphon genus 15 Acyrthosiphon pisum species 1 Myzus genus 1 Myzus persicae species 1 Chelicerata subphylum 1 Pycnogonida class 1 Pantopoda order 1 Callipallenidae family 1 Callipallene genus 1 Nemertea phylum 1 Anopla class 1 Heteronemertea order 1 Lineidae family 1 Lineus genus 1 Lineus bicolor species 2 Platyhelminthes phylum 2 Trematoda class 2 Digenea subclass 2 Opisthorchiida order 2 Opisthorchiata suborder 2 Opisthorchiidae family 2 Clonorchis genus 2 Clonorchis sinensis species 2 Pavlovales order 2 Pavlovaceae family 2 Pavlova genus 2 Pavlova lutheri species 3 Florideophyceae class 1 Gigartinales order 1 Phyllophoraceae family 1 Mastocarpus genus 1 Mastocarpus papillatus species 1 Gracilariales order 1 Gracilariaceae family 1 Gracilaria genus 1 Gracilaria tenuistipitata species 1 Gracilaria tenuistipitata var. liui varietas 1 Halymeniales order 1 Halymeniaceae family 1 Prionitis genus 1 Prionitis lanceolata species 2 Fungi kingdom 2 Dikarya subkingdom 2 Basidiomycota phylum 1 Pucciniomycotina subphylum 1 Pucciniomycetes subclass 1 Pucciniales order 1 Phakopsoraceae family 1 Phakopsora genus 1 Phakopsora pachyrhizi species 1 Agaricomycetes class 1 Russulales order 1 Russulaceae family 1 Gymnomyces genus 1 Gymnomyces foetens species 1 uncultured haptophyte species 1 Jakobidae family 1 Jakoba genus 1 Jakoba libera species 1 Phaeophyceae phylum 1 Ectocarpales order 1 Acinetosporaceae family 1 Pylaiella genus 1 Pylaiella littoralis species 3 Isochrysidales order 3 Noelaerhabdaceae family 3 Emiliania genus 3 Emiliania huxleyi species 1 Intramacronucleata subphylum 1 Spirotrichea class 1 Stichotrichia subclass 1 Stichotrichida order 1 Stichotrichida sp. Alaska species 2 Saprolegniales order 2 Saprolegniaceae family 2 Saprolegnia genus 2 Saprolegnia ferax species 8 Histionidae family 1 Histiona genus 1 Histiona aroides species 7 Reclinomonas genus 7 Reclinomonas americana species 1 Eustigmatophyceae phylum 1 Eustigmatales order 1 Monodopsidaceae family 1 Nannochloropsis genus 1 Nannochloropsis gaditana species 1 Bolidophyceae phylum 1 Bolidomonas genus 1 Bolidomonas sp. OLI46SE species 16 Pythiales order 16 Pythiaceae family 16 Pythium genus 16 Pythium ultimum species 7 Bacillariophyta phylum 1 Fragilariophyceae class 1 Fragilariales order 1 Fragilariaceae family 1 Fragilaria genus 1 Fragilaria pinnata species 1 Bacillariophyceae class 1 Thalassiophysales order 1 Catenulaceae family 1 Amphora genus 1 Amphora coffeaeformis species 1 Mediophyceae class 1 Biddulphiophycidae subclass 1 Eupodiscales order 1 Eupodiscaceae family 1 Odontella genus 1 Odontella sinensis species 4 Coscinodiscophyceae class 1 Skeletonemataceae family 1 Skeletonema genus 1 Skeletonema costatum species 3 Thalassiosiraceae family 3 Thalassiosira genus 2 Thalassiosira pseudonana species 1 Thalassiosira weissflogii species 2 Albuginales order 2 Albuginaceae family 2 Albugo genus 2 Albugo laibachii species 4 Apicomplexa phylum 4 Coccidia class 4 Eucoccidiorida order 4 Eimeriorina suborder 2 Sarcocystidae family 2 Toxoplasma genus 2 Toxoplasma gondii species 2 Eimeriidae family 2 Eimeria genus 1 Eimeria tropidura species 1 Eimeria pilarensis species 19 Viridiplantae kingdom 17 Streptophyta phylum 3 Mesostigmatophyceae class 3 Mesostigmatales order 3 Mesostigmataceae family 3 Mesostigma genus 3 Mesostigma viride species 1 Polypodiidae subclass 1 Gleicheniales order 1 Matoniaceae family 1 Phanerosorus genus 2 rosids subclass 1 Malpighiales order 1 Salicaceae family 1 Saliceae tribe 1 Populus genus 1 Populus trichocarpa species 1 Fagales order 1 Betulaceae family 1 Betula genus 1 Betula platyphylla species 8 Liliopsida class 8 commelinids subclass 7 Poales order 7 Poaceae family 1 Panicoideae subfamily 1 Andropogoneae tribe 1 Sorghum genus 1 Sorghum bicolor species 3 Pooideae subfamily 3 Triticeae tribe 2 Hordeum genus 2 Hordeum vulgare species 2 Hordeum vulgare subsp. vulgare subspecies 1 Triticum genus 1 Triticum aestivum species 3 Ehrhartoideae subfamily 3 Oryzeae tribe 3 Oryza genus 3 Oryza sativa species 1 Zingiberales order 1 Musaceae family 1 Musa genus 1 Musa acuminata species 1 Chloranthales order 1 Chloranthaceae family 1 Chloranthus genus 1 Chloranthus spicatus species 2 asterids subclass 1 Asterales order 1 Asteraceae family 1 Cichorioideae subfamily 1 Cichorieae tribe 1 Crepidinae subtribe 1 Taraxacum genus 1 Taraxacum platycarpum species 1 Taraxacum platycarpum subsp. platycarpum subspecies 1 Taraxacum platycarpum var. longeappendiculatum varietas 1 Aquifoliales order 1 Aquifoliaceae family 1 Ilex genus 1 Ilex buergeri species 2 Chlorophyta phylum 2 Nephroselmidophyceae class 2 Nephroselmis genus 2 Nephroselmis olivacea species 3 Cryptophyta class 3 Pyrenomonadales order 2 Pyrenomonadaceae family 2 Rhodomonas genus 2 Rhodomonas salina species 1 Geminigeraceae family 1 Guillardia genus 1 Guillardia theta species 1 Stylonematophyceae class 1 Stylonematales order 1 Stylonemataceae family 1 Rhodosorus genus 1 Rhodosorus marinus species 46 Peronosporales order 1 Peronosporaceae family 1 Pseudoperonospora genus 1 Pseudoperonospora cubensis species 45 Phytophthora genus 2 Phytophthora lateralis species 1 Phytophthora andina species 5 Phytophthora nicotianae species 1 Phytophthora medicaginis species 1 Phytophthora katsurae species 1 Phytophthora citrophthora species 1 Phytophthora drechsleri species 5 Phytophthora infestans species 1 Phytophthora alni species 1 Phytophthora alni subsp. alni subspecies 1 Phytophthora fragariae species 1 Phytophthora citricola species 1 Phytophthora phaseoli species 2 Phytophthora sojae species 1 Phytophthora megasperma species 1 Phytophthora inundata species 1 Phytophthora palmivora species 3 Phytophthora ramorum species 1 Phytophthora cryptogea species 1 Phytophthora cactorum species 1 Phytophthora mirabilis species 1 Phytophthora capsici species 1 Phytophthora pseudosyringae species 1 Phytophthora cambivora species 2 Phytophthora cinnamomi species 4 Phytophthora kernoviae species 1 Phytophthora europaea species 1 Phytophthora ipomoeae species 1 Phytophthora quercina species 1 Phytophthora erythroseptica species 1 Andalucia genus 1 Andalucia godoyi species 1 Dinophyceae class 1 Gonyaulacales order 1 Lingulodinium genus 1 Lingulodinium polyedrum species 1 Prymnesiales order 1 Prymnesiaceae family 1 Prymnesium genus 1 Prymnesium parvum species 1 Glaucocystophyceae class 1 Cyanophoraceae family 1 Cyanophora genus 1 Cyanophora paradoxa species 1 Seculamonas genus 1 Seculamonas ecuadoriensis species 12 Bangiophyceae class 11 Cyanidiales order 11 Cyanidiaceae family 1 Cyanidium genus 1 Cyanidium caldarium species 10 Cyanidioschyzon genus 10 Cyanidioschyzon merolae species 1 Bangiales order 1 Bangiaceae family 1 Porphyra genus 1 Porphyra purpurea species 1 freshwater sediment metagenome species 11 human gut metagenome species 24 Viruses superkingdom 1 Streptococcus phage phi30c species 22 Caudovirales order 3 Siphoviridae family 2 Mycobacterium phage DS6A species 1 Mycobacterium phage Wildcat species 19 Myoviridae family 16 I3likevirus genus 1 Mycobacterium phage Dandelion species 1 Mycobacterium phage Spud species 1 Mycobacterium phage LinStu species 1 Mycobacterium phage Catera species 1 Mycobacterium phage Astraea species 1 Mycobacterium phage Bxz1 species 1 Mycobacterium phage Pio species 1 Mycobacterium phage ET08 species 1 Mycobacterium phage ScottMcG species 1 Mycobacterium phage Rizal species 1 Mycobacterium phage Pleione species 2 Mycobacterium phage Cali species 1 Mycobacterium phage MoMoMixon species 1 Mycobacterium phage Sebata species 1 Mycobacterium phage Wally species 1 Mycobacterium phage Ava3 species 1 Bacillus phage G species 1 Mycobacterium phage Ghost species 1 Enterobacteria phage CP-1639 species