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The tmRNA Website

The tmRNA Website

Image Title The tmRNA Website.


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Sandia Biology

Simiduia agarivorans SA1 = DSM 21679


Sequence

        10        20        30        40        50
.....GGGGCCGATTAGGATTCGACGGCGGTAACAAAACCCGAAGTGCATGTCGTGAGGGTAGCCAATCACGTAAATCCAAAGCTACAAACTATTAGTTgccaacgatgacaactacggtgcccagctggctgcgTAAGCGGCTTGTGAAGCACTAACTAGGGGTTCGCCCTTAGCGGTCTTTAACAAGGTGCCAGTACCGCGTTAACGACTGTCATACAGAACTGGATCGCCGTGAAGCCTGCCTGGGGTGGATCTGCTAAACCTTATCAGGATCGCGTTTTACGTCTCGCCCGCTGGGCTGTAAAGCGTTAAATCAATAAGCGGTTCTAAACATGTAGAGCTGACGGCGGAGTACTGACGGACGGGGGTTCAAATCCCCCCGGCTCCAcca

Annotation


tmID: 19172
Length: 388 nts
Accession: CP003746.2/416608-416221
NC_018868.3/416608-416221
Proteolysis Tag: (A)ANDDNYGAQLAA*
CCA: 386..388 (cca)
Links to additional tmRNA in the same genome
NC_018868.3/3594315-3594702

SmpB Pseudogene

Predicted coordinates: NC_018868.3/3781855-3781377
Pseudogene coordinates: NC_018868.3/3781838-3781377

Translation:

MakakkktadntiaqnkkarfdyalgekfeagIelqgweVkslragkvqLVdsfvqfhrgeawlMgalIspiqsvsthyVaepnrkrkllLhrrelarlqqgveqkgytVVctalywknhlvkaaValakgkaehdkrqtekdrdwgrekqrivrdhnrZ



SmpB

Coordinates: NC_018868.3/3772176-3771697

Translation:

MakakkktadntiaqnkkarfdyalgekfeagIelqgweVkslragkvqLVdsfvqfhrgeawlMgalIspiqsvsthyVaepnrkrkllLhrrelarlqqgveqkgytVVctalywknhlvkaaValakgkaehdkrqtekdrdwgrekqrivrdhnrZ



Abbreviated Taxonomy

Proteobacteria,Gamma: Simiduia: Simiduia agarivorans SA1 = DSM 21679


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