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The tmRNA Website

The tmRNA Website

Image Title The tmRNA Website.


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Sandia Biology

Clostridium difficile M120


Sequence

        10        20        30        40        50
.....GGGGGCGTAAAGGTTTCGACGTGGGTTTGGAACTTGAGGCTGCATGTCGTGTTACTCTGGGTCACGTAAAAACTGGGGAACTTTAAAATAAACgcagacgataatttcgcgatagcagccTAGTTGCTGCTCGTCCCTCTTAGTCCTCCTGCCGACTAAGACTGGACGTCATTATGCAGGGAACTACTTTAGGGGTGTCTCGACTTAAAGTAGATTAATTGGGACTGGCTAAGCATAGAGCCTGCCACTTGGCGCTATGTGAGGTGAGATATTAGTGAAGTTGGCTAAGCATGTAGATGCAGCAAGGAAAAGATTTGCGGACAGGGGTTCGACTCCCCTCGTCTCCAcca

Annotation


tmID: 15031
Length: 350 nts
Accession: FN665653.1/3497716-3497367
NC_017174.1/3497716-3497367
Proteolysis Tag: (A)ADDNFAIAA*
CCA: 348..350 (cca)

SmpB Pseudogene

Predicted coordinates: NC_017174.1/3498330-3497874
Pseudogene coordinates: NC_017174.1/3498317-3497874
Cooriented, 158bp upstream of tmRNA

Translation:

MagkkilatnkrarheyfieetyecgielkgtevksirqgkvnlsdgfasvdnsevflkqvhispyeqgnifnvdslrvrklLlhkheirklIgattikgysliplsLylkngkvkveIalakgkklydkrqdMakkdaqrriereMtgkyZ



Abbreviated Taxonomy

Firmicutes,Clostridia: [Clostridium]: Clostridium difficile M120


Identical tmRNA Sequences

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