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The tmRNA Website

The tmRNA Website

Image Title The tmRNA Website.


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Sandia Biology

Clostridium difficile CF5


Sequence

        10        20        30        40        50
.....GGGGGCGTAAAGGTTTCGACGTGGGTTTGGAACTTGAGGCTGCATGTCGTGTTACTCTGGGTCACGTAAAAACTGGGGAACTTTAAAATAAACgcagacgataatttcgcgatagcagccTAGTTGCTGCTCGTCCCTCTTAGTCCTCCTGCCGACTAAGACTGGACGTCATTATGCAGGGAACTACTTTAGGGGTGTCTCGACTTAAAGTAGATTAATTGGGACTGGCTAAGCATAGAGCCTGCCACTTGGCGCTATGTGAGGTGAGATATTAGTGAAGTTGGCTAAGCATGTAGATGCAGCAAGGAAAAGATTTGCGGACAGGGGTTCGACTCCCCTCGTCTCCAcca

Annotation


tmID: 10063
Length: 350 nts
Accession: FN665652.1/3599194-3598845
NC_017173.1/3599194-3598845
Proteolysis Tag: (A)ADDNFAIAA*
CCA: 348..350 (cca)

SmpB Pseudogene

Predicted coordinates: NC_017173.1/3599806-3599352
Pseudogene coordinates: NC_017173.1/3599477-3599352
Cooriented, 158bp upstream of tmRNA

Translation:

MagkkilatnkrarheyfieetyecgIelkgtevksirqgkvnlsdgfasvdnsevflkqvhispyeqgnifnvdslrvrklllhkheirklIgattikgysliplsLylkngkvkveIalakgkklydkrqdMakkdaqrriereMtgkyZ



Abbreviated Taxonomy

Firmicutes,Clostridia: [Clostridium]: Clostridium difficile CF5


Identical tmRNA Sequences

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