members magnitude count unassigned taxon rank tax_out 3927 8 Viruses/Plasmids superkingdom 7 Viruses 1 Plasmid 3793 Bacteria superkingdom 2 Thermobaculum genus 2 Thermobaculum terrenum species 1 Dictyoglomi phylum 1 Dictyoglomia class 1 Dictyoglomales order 1 Dictyoglomaceae family 1 Dictyoglomus genus 1 Dictyoglomus turgidum species 1 Chrysiogenetes phylum 1 Chrysiogenetes class 1 Chrysiogenales order 1 Chrysiogenaceae family 1 Desulfurispirillum genus 1 Desulfurispirillum indicum species 50 Cyanobacteria phylum 1 Gloeobacteria class 1 Gloeobacterales order 1 Gloeobacter genus 1 Gloeobacter violaceus species 8 Prochlorales order 8 Prochlorococcaceae family 8 Prochlorococcus genus 8 Prochlorococcus marinus species 8 Nostocales order 8 Nostocaceae family 2 Anabaena genus 2 Anabaena variabilis species 1 Trichormus genus 1 Trichormus azollae species 5 Nostoc genus 3 Nostoc punctiforme species 2 Nostoc sp. PCC 7120 species 33 Oscillatoriophycideae subclass 33 Chroococcales order 4 Acaryochloris genus 4 Acaryochloris marina species 11 Synechococcus genus 5 Synechococcus sp. WH 8102 species 4 Synechococcus sp. CC9605 species 1 Synechococcus sp. PCC 7002 species 1 Synechococcus sp. CC9902 species 18 Cyanothece genus 6 Cyanothece sp. PCC 7425 species 1 Cyanothece sp. PCC 8801 species 6 Cyanothece sp. PCC 7822 species 2 Cyanothece sp. PCC 7424 species 2 Cyanothece sp. ATCC 51142 species 1 Cyanothece sp. PCC 8802 species 3 Tenericutes phylum 3 Mollicutes class 3 Mycoplasmatales order 3 Mycoplasmataceae family 3 Mycoplasma genus 1 Mycoplasma fermentans species 1 Mycoplasma agalactiae species 1 Mycoplasma hyorhinis species 2 Fusobacteria phylum 2 Fusobacteriia class 2 Fusobacteriales order 2 Fusobacteriaceae family 2 Ilyobacter genus 2 Ilyobacter polytropus species 2 Elusimicrobia phylum 2 Elusimicrobia class 2 Elusimicrobiales order 2 Elusimicrobiaceae family 2 Elusimicrobium genus 2 Elusimicrobium minutum species 3 Gemmatimonadetes phylum 3 Gemmatimonadetes class 3 Gemmatimonadales order 3 Gemmatimonadaceae family 3 Gemmatimonas genus 3 Gemmatimonas aurantiaca species 19 Nitrospirae phylum 19 Nitrospira class 19 Nitrospirales order 19 Nitrospiraceae family 1 Thermodesulfovibrio genus 1 Thermodesulfovibrio yellowstonii species 6 Nitrospira genus 6 Candidatus Nitrospira defluvii species 12 Leptospirillum genus 4 Leptospirillum sp. Group I species group 4 Leptospirillum ferrooxidans species 8 Leptospirillum sp. Group III species group 8 Leptospirillum ferriphilum species 11 Deferribacteres phylum 11 Deferribacteres class 11 Deferribacterales order 11 Deferribacteraceae family 5 Denitrovibrio genus 5 Denitrovibrio acetiphilus species 3 Flexistipes genus 3 Flexistipes sinusarabici species 3 Deferribacter genus 3 Deferribacter desulfuricans species 525 Actinobacteria phylum 525 Actinobacteria class 9 Coriobacteridae subclass 9 Coriobacteriales order 9 Coriobacterineae suborder 9 Coriobacteriaceae family 4 Slackia genus 4 Slackia heliotrinireducens species 1 Atopobium genus 1 Atopobium parvulum species 2 Eggerthella genus 2 Eggerthella sp. YY7918 species 1 Cryptobacterium genus 1 Cryptobacterium curtum species 1 Olsenella genus 1 Olsenella uli species 4 Rubrobacteridae subclass 3 Rubrobacterales order 3 Rubrobacterineae suborder 3 Rubrobacteraceae family 3 Rubrobacter genus 3 Rubrobacter xylanophilus species 1 Solirubrobacterales order 1 Conexibacteraceae family 1 Conexibacter genus 1 Conexibacter woesei species 512 Actinobacteridae subclass 467 Actinomycetales order 60 Streptomycineae suborder 60 Streptomycetaceae family 2 Kitasatospora genus 2 Kitasatospora setae species 58 Streptomyces genus 8 Streptomyces sp. SirexAA-E species 5 Streptomyces hygroscopicus species 5 Streptomyces hygroscopicus subsp. jinggangensis subspecies 6 Streptomyces cattleya species 4 Streptomyces coelicolor species 3 Streptomyces bingchenggensis species 6 Streptomyces pratensis species 6 Streptomyces violaceusniger species 5 Streptomyces griseus group species subgroup 5 Streptomyces griseus species 5 Streptomyces griseus subsp. griseus subspecies 4 Streptomyces venezuelae species 4 Streptomyces avermitilis species 7 Streptomyces scabiei species 174 Corynebacterineae suborder 31 Corynebacteriaceae family 31 Corynebacterium genus 1 Corynebacterium aurimucosum species 14 Corynebacterium diphtheriae species 2 Corynebacterium urealyticum species 4 Corynebacterium ulcerans species 1 Corynebacterium kroppenstedtii species 2 Corynebacterium efficiens species 5 Corynebacterium glutamicum species 1 Corynebacterium variabile species 1 Corynebacterium jeikeium species 18 Nocardiaceae family 10 Nocardia genus 4 Nocardia farcinica species 2 Nocardia brasiliensis species 4 Nocardia cyriacigeorgica species 8 Rhodococcus genus 3 Rhodococcus erythropolis species 1 Rhodococcus jostii species 4 Rhodococcus opacus species 102 Mycobacteriaceae family 101 Mycobacterium genus 5 Mycobacterium sp. KMS species 7 Mycobacterium gilvum species 34 Mycobacterium tuberculosis complex species group 4 Mycobacterium bovis species 28 Mycobacterium tuberculosis species 1 Mycobacterium africanum species 1 Mycobacterium canettii species 5 Mycobacterium vanbaalenii species 4 Mycobacterium sp. JLS species 1 Mycobacterium chelonae group species group 1 Mycobacterium abscessus subgroup species subgroup 1 Mycobacterium abscessus species 21 Mycobacterium avium complex (MAC) species group 6 Mycobacterium avium species 3 Mycobacterium avium subsp. paratuberculosis subspecies 11 Mycobacterium intracellulare species 4 Mycobacterium indicus pranii species 6 Mycobacterium marinum species 2 Mycobacterium rhodesiae species 3 Mycobacterium sp. MCS species 2 Mycobacterium ulcerans species 3 Mycobacterium sp. JDM601 species 3 Mycobacterium chubuense species 3 Mycobacterium sp. MOTT36Y species 2 Mycobacterium smegmatis species 1 Amycolicicoccus genus 1 Amycolicicoccus subflavus species 1 Tsukamurellaceae family 1 Tsukamurella genus 1 Tsukamurella paurometabola species 10 Segniliparaceae family 10 Segniliparus genus 10 Segniliparus rotundus species 12 Gordoniaceae family 12 Gordonia genus 6 Gordonia polyisoprenivorans species 2 Gordonia bronchialis species 4 Gordonia sp. KTR9 species 24 Streptosporangineae suborder 7 Thermomonosporaceae family 7 Thermomonospora genus 7 Thermomonospora curvata species 8 Nocardiopsaceae family 2 Thermobifida genus 2 Thermobifida fusca species 6 Nocardiopsis genus 5 Nocardiopsis dassonvillei species 5 Nocardiopsis dassonvillei subsp. dassonvillei subspecies 1 Nocardiopsis alba species 9 Streptosporangiaceae family 9 Streptosporangium genus 9 Streptosporangium roseum species 30 Micrococcineae suborder 5 Intrasporangiaceae family 5 Intrasporangium genus 5 Intrasporangium calvum species 6 Micrococcaceae family 3 Micrococcus genus 3 Micrococcus luteus species 3 Arthrobacter genus 1 Arthrobacter arilaitensis species 1 Arthrobacter sp. FB24 species 1 Arthrobacter phenanthrenivorans species 2 Dermabacteraceae family 2 Brachybacterium genus 2 Brachybacterium faecium species 7 Cellulomonadaceae family 7 Cellulomonas genus 4 [Cellvibrio] gilvus species 3 Cellulomonas fimi species 2 Microbacteriaceae family 1 Leifsonia genus 1 Leifsonia xyli species 1 Leifsonia xyli subsp. xyli subspecies 1 Microbacterium genus 1 Microbacterium testaceum species 4 Jonesiaceae family 4 Jonesia genus 4 Jonesia denitrificans species 4 Promicromonosporaceae family 4 Xylanimonas genus 4 Xylanimonas cellulosilytica species 2 Kineosporiineae suborder 2 Kineosporiaceae family 2 Kineococcus genus 2 Kineococcus radiotolerans species 36 Micromonosporineae suborder 36 Micromonosporaceae family 8 Actinoplanes genus 5 Actinoplanes sp. SE50/110 species 3 Actinoplanes missouriensis species 6 Verrucosispora genus 6 Verrucosispora maris species 14 Micromonospora genus 8 Micromonospora aurantiaca species 6 Micromonospora sp. L5 species 8 Salinispora genus 4 Salinispora arenicola species 4 Salinispora tropica species 6 Glycomycineae suborder 6 Glycomycetaceae family 6 Stackebrandtia genus 6 Stackebrandtia nassauensis species 17 Propionibacterineae suborder 8 Nocardioidaceae family 4 Nocardioides genus 4 Nocardioides sp. JS614 species 4 Kribbella genus 4 Kribbella flavida species 9 Propionibacteriaceae family 5 Microlunatus genus 5 Microlunatus phosphovorus species 4 Propionibacterium genus 2 Propionibacterium acidipropionici species 2 Propionibacterium freudenreichii species 2 Propionibacterium freudenreichii subsp. shermanii subspecies 47 Pseudonocardineae suborder 47 Pseudonocardiaceae family 24 Amycolatopsis genus 24 Amycolatopsis mediterranei species 6 Pseudonocardia genus 6 Pseudonocardia dioxanivorans species 6 Saccharopolyspora genus 6 Saccharopolyspora erythraea species 2 Thermobispora genus 2 Thermobispora bispora species 7 Actinosynnema genus 7 Actinosynnema mirum species 2 Saccharomonospora genus 2 Saccharomonospora viridis species 2 Actinomycineae suborder 2 Actinomycetaceae family 2 Mobiluncus genus 2 Mobiluncus curtisii species 66 Frankineae suborder 6 Nakamurellaceae family 6 Nakamurella genus 6 Nakamurella multipartita species 21 Geodermatophilaceae family 6 Modestobacter genus 6 Modestobacter marinus species 8 Geodermatophilus genus 8 Geodermatophilus obscurus species 7 Blastococcus genus 7 Blastococcus saxobsidens species 39 Frankiaceae family 39 Frankia genus 10 Frankia sp. EAN1pec species 6 Frankia alni species 8 Frankia sp. EuI1c species 9 Frankia symbiont of Datisca glomerata species 6 Frankia sp. CcI3 species 3 Catenulisporineae suborder 3 Catenulisporaceae family 3 Catenulispora genus 3 Catenulispora acidiphila species 45 Bifidobacteriales order 45 Bifidobacteriaceae family 44 Bifidobacterium genus 2 Bifidobacterium breve species 17 Bifidobacterium longum species 6 Bifidobacterium longum subsp. longum subspecies 6 Bifidobacterium longum subsp. infantis subspecies 3 Bifidobacterium dentium species 19 Bifidobacterium animalis species 1 Bifidobacterium animalis subsp. animalis subspecies 18 Bifidobacterium animalis subsp. lactis subspecies 3 Bifidobacterium bifidum species 1 Gardnerella genus 1 Gardnerella vaginalis species 1 Aquificae phylum 1 Aquificae class 1 Aquificales order 1 Aquificaceae family 1 Aquifex genus 1 Aquifex aeolicus species 18 Chlamydiae/Verrucomicrobia group superphylum 9 Chlamydiae phylum 9 Chlamydiia class 9 Chlamydiales order 3 Parachlamydiaceae family 3 Parachlamydia genus 3 Parachlamydia acanthamoebae species 5 Chlamydiaceae family 5 Chlamydia genus 5 Chlamydia psittaci species 1 Waddliaceae family 1 Waddlia genus 1 Waddlia chondrophila species 9 Verrucomicrobia phylum 5 Opitutae class 1 Puniceicoccales order 1 Puniceicoccaceae family 1 Coraliomargarita genus 1 Coraliomargarita akajimensis species 4 Opitutaceae family 4 Opitutus genus 4 Opitutus terrae species 4 Verrucomicrobiae class 4 Verrucomicrobiales order 4 Verrucomicrobiaceae family 4 Akkermansia genus 4 Akkermansia muciniphila species 2440 Proteobacteria phylum 251 delta/epsilon subdivisions subphylum 61 Epsilonproteobacteria class 1 Nautiliales order 1 Nautiliaceae family 1 Nautilia genus 1 Nautilia profundicola species 55 Campylobacterales order 3 Nitratifractor genus 3 Nitratifractor salsuginis species 18 Helicobacteraceae family 4 Sulfuricurvum genus 4 Sulfuricurvum kujiense species 6 Helicobacter genus 5 Helicobacter pylori species 1 Helicobacter cetorum species 2 Wolinella genus 2 Wolinella succinogenes species 6 Sulfurimonas genus 3 Sulfurimonas autotrophica species 3 Sulfurimonas denitrificans species 34 Campylobacteraceae family 12 Arcobacter genus 4 Arcobacter sp. L species 4 Arcobacter butzleri species 4 Arcobacter nitrofigilis species 7 Sulfurospirillum genus 3 Sulfurospirillum deleyianum species 4 Sulfurospirillum barnesii species 15 Campylobacter genus 1 Campylobacter fetus species 1 Campylobacter fetus subsp. fetus subspecies 6 Campylobacter jejuni species 1 Campylobacter jejuni subsp. jejuni subspecies 2 Campylobacter jejuni subsp. doylei subspecies 1 Campylobacter hominis species 2 Campylobacter curvus species 4 Campylobacter concisus species 1 Campylobacter lari species 2 Nitratiruptor genus 2 Nitratiruptor sp. SB155-2 species 3 Sulfurovum genus 3 Sulfurovum sp. NBC37-1 species 190 Deltaproteobacteria class 32 Myxococcales order 2 Sorangiineae suborder 2 Polyangiaceae family 2 Sorangium genus 2 Sorangium cellulosum species 2 Nannocystineae suborder 2 Kofleriaceae family 2 Haliangium genus 2 Haliangium ochraceum species 28 Cystobacterineae suborder 20 Anaeromyxobacteraceae family 20 Anaeromyxobacter genus 6 Anaeromyxobacter sp. Fw109-5 species 11 Anaeromyxobacter dehalogenans species 3 Anaeromyxobacter sp. K species 1 Cystobacteraceae family 1 Stigmatella genus 1 Stigmatella aurantiaca species 7 Myxococcaceae family 2 Corallococcus genus 2 Corallococcus coralloides species 5 Myxococcus genus 1 Myxococcus xanthus species 4 Myxococcus fulvus species 3 Desulfarculales order 3 Desulfarculaceae family 3 Desulfarculus genus 3 Desulfarculus baarsii species 64 Desulfovibrionales order 2 Desulfomicrobiaceae family 2 Desulfomicrobium genus 2 Desulfomicrobium baculatum species 2 Desulfohalobiaceae family 2 Desulfohalobium genus 2 Desulfohalobium retbaense species 60 Desulfovibrionaceae family 1 Lawsonia genus 1 Lawsonia intracellularis species 59 Desulfovibrio genus 3 Desulfovibrio africanus species 5 Desulfovibrio alaskensis species 8 Desulfovibrio desulfuricans species 4 Desulfovibrio desulfuricans subsp. desulfuricans subspecies 4 Desulfovibrio aespoeensis species 19 Desulfovibrio magneticus species 3 Desulfovibrio salexigens species 17 Desulfovibrio vulgaris species 37 Desulfuromonadales order 11 Pelobacteraceae family 11 Pelobacter genus 7 Pelobacter propionicus species 4 Pelobacter carbinolicus species 26 Geobacteraceae family 26 Geobacter genus 6 Geobacter bemidjiensis species 3 Geobacter sulfurreducens species 2 Geobacter metallireducens species 1 Geobacter uraniireducens species 6 Geobacter sp. M18 species 2 Geobacter lovleyi species 6 Geobacter sp. M21 species 37 Desulfobacterales order 13 Desulfobulbaceae family 3 Desulfotalea genus 3 Desulfotalea psychrophila species 6 Desulfobulbus genus 6 Desulfobulbus propionicus species 4 Desulfurivibrio genus 4 Desulfurivibrio alkaliphilus species 24 Desulfobacteraceae family 5 Desulfococcus genus 5 Desulfococcus oleovorans species 8 Desulfatibacillum genus 8 Desulfatibacillum alkenivorans species 7 Desulfobacula genus 7 Desulfobacula toluolica species 4 Desulfobacterium genus 4 Desulfobacterium autotrophicum species 1 Bdellovibrionales order 1 Bacteriovoracaceae family 1 Bacteriovorax genus 1 Bacteriovorax marinus species 16 Syntrophobacterales order 4 Syntrophobacteraceae family 4 Syntrophobacter genus 4 Syntrophobacter fumaroxidans species 12 Syntrophaceae family 8 Desulfomonile genus 8 Desulfomonile tiedjei species 1 Desulfobacca genus 1 Desulfobacca acetoxidans species 3 Syntrophus genus 3 Syntrophus aciditrophicus species 636 Alphaproteobacteria class 7 Candidatus Puniceispirillum genus 7 Candidatus Puniceispirillum marinum species 124 Rhodospirillales order 80 Acetobacteraceae family 3 Gluconobacter genus 3 Gluconobacter oxydans species 56 Acetobacter genus 56 Acetobacter pasteurianus species 56 Acetobacter pasteurianus subsp. pasteurianus subspecies 5 Komagataeibacter genus 5 Komagataeibacter medellinensis species 1 Granulibacter genus 1 Granulibacter bethesdensis species 7 Gluconacetobacter genus 7 Gluconacetobacter diazotrophicus species 8 Acidiphilium genus 4 Acidiphilium multivorum species 4 Acidiphilium cryptum species 44 Rhodospirillaceae family 24 Azospirillum genus 17 Azospirillum lipoferum species 7 Azospirillum brasilense species 1 Tistrella genus 1 Tistrella mobilis species 10 Magnetospirillum genus 10 Magnetospirillum magneticum species 9 Rhodospirillum genus 2 Rhodospirillum photometricum species 1 Rhodospirillum centenum species 6 Rhodospirillum rubrum species 45 Sphingomonadales order 5 Erythrobacteraceae family 5 Erythrobacter genus 5 Erythrobacter litoralis species 40 Sphingomonadaceae family 3 Sphingopyxis genus 3 Sphingopyxis alaskensis species 11 Novosphingobium genus 4 Novosphingobium aromaticivorans species 7 Novosphingobium sp. PP1Y species 21 Sphingobium genus 10 Sphingobium chlorophenolicum species 5 Sphingobium japonicum species 6 Sphingobium sp. SYK-6 species 5 Sphingomonas genus 5 Sphingomonas wittichii species 2 Polymorphum gilvum species 338 Rhizobiales order 8 Bartonellaceae family 8 Bartonella genus 1 Bartonella bacilliformis species 4 Bartonella tribocorum species 1 Bartonella henselae species 2 Bartonella grahamii species 58 Brucellaceae family 9 Ochrobactrum genus 9 Ochrobactrum anthropi species 49 Brucella genus 9 Brucella suis species 3 Brucella pinnipedialis species 3 Brucella microti species 5 Brucella canis species 12 Brucella abortus species 1 Brucella ovis species 16 Brucella melitensis species 3 Methylocystaceae family 3 Methylocystis genus 3 Methylocystis sp. SC2 species 12 Phyllobacteriaceae family 7 Mesorhizobium genus 4 Mesorhizobium loti species 2 Mesorhizobium opportunistum species 1 Mesorhizobium ciceri species 5 Chelativorans genus 5 Chelativorans sp. BNC1 species 22 Hyphomicrobiaceae family 7 Rhodomicrobium genus 7 Rhodomicrobium vannielii species 10 Hyphomicrobium genus 6 Hyphomicrobium sp. MC1 species 4 Hyphomicrobium denitrificans species 5 Pelagibacterium genus 5 Pelagibacterium halotolerans species 1 Rhodobiaceae family 1 Parvibaculum genus 1 Parvibaculum lavamentivorans species 12 Xanthobacteraceae family 2 Xanthobacter genus 2 Xanthobacter autotrophicus species 5 Starkeya genus 5 Starkeya novella species 5 Azorhizobium genus 5 Azorhizobium caulinodans species 66 Rhizobiaceae family 10 Rhizobium genus 6 Rhizobium etli species 4 Rhizobium leguminosarum species 39 Sinorhizobium genus 16 Sinorhizobium fredii species 20 Sinorhizobium meliloti species 3 Sinorhizobium medicae species 2 Candidatus Liberibacter genus 2 Candidatus Liberibacter solanacearum species 15 Agrobacterium genus 1 Agrobacterium sp. H13-3 species 9 Agrobacterium vitis species 5 Agrobacterium tumefaciens complex species group 3 Agrobacterium tumefaciens species 2 Agrobacterium fabrum species 69 Methylobacteriaceae family 69 Methylobacterium genus 17 Methylobacterium nodulans species 14 Methylobacterium sp. 4-46 species 6 Methylobacterium populi species 2 Methylobacterium radiotolerans species 30 Methylobacterium extorquens group species group 30 Methylobacterium extorquens species 79 Bradyrhizobiaceae family 26 Rhodopseudomonas genus 26 Rhodopseudomonas palustris species 14 Nitrobacter genus 4 Nitrobacter winogradskyi species 10 Nitrobacter hamburgensis species 11 Oligotropha genus 11 Oligotropha carboxidovorans species 28 Bradyrhizobium genus 8 Bradyrhizobium sp. BTAi1 species 3 Bradyrhizobium sp. S23321 species 7 Bradyrhizobium diazoefficiens species 5 Bradyrhizobium japonicum species 5 Bradyrhizobium sp. ORS 278 species 8 Beijerinckiaceae family 2 Beijerinckia genus 2 Beijerinckia indica species 2 Beijerinckia indica subsp. indica subspecies 6 Methylocella genus 6 Methylocella silvestris species 13 Caulobacterales order 13 Caulobacteraceae family 1 Phenylobacterium genus 1 Phenylobacterium zucineum species 9 Caulobacter genus 1 Caulobacter segnis species 3 Caulobacter vibrioides species 5 Caulobacter sp. K31 species 1 Asticcacaulis genus 1 Asticcacaulis excentricus species 2 Brevundimonas genus 2 Brevundimonas subvibrioides species 6 Rickettsiales order 4 Rickettsiaceae family 4 Rickettsieae tribe 4 Rickettsia genus 3 spotted fever group species group 1 Rickettsia montanensis species 1 Rickettsia japonica species 1 Rickettsia massiliae species 1 belli group species group 1 Rickettsia bellii species 2 Anaplasmataceae family 2 Wolbachieae tribe 2 Wolbachia genus 1 Wolbachia endosymbiont of Drosophila melanogaster species 1 Wolbachia endosymbiont of Onchocerca ochengi species 4 Micavibrio genus 4 Micavibrio aeruginosavorus species 97 Rhodobacterales order 9 Hyphomonadaceae family 2 Maricaulis genus 2 Maricaulis maris species 3 Hyphomonas genus 3 Hyphomonas neptunium species 4 Hirschia genus 4 Hirschia baltica species 88 Rhodobacteraceae family 9 Ruegeria genus 4 Ruegeria sp. TM1040 species 5 Ruegeria pomeroyi species 8 Paracoccus genus 8 Paracoccus denitrificans species 6 Jannaschia genus 6 Jannaschia sp. CCS1 species 37 Rhodobacter genus 6 Rhodobacter capsulatus species 31 Rhodobacter sphaeroides species 5 Dinoroseobacter genus 5 Dinoroseobacter shibae species 8 Phaeobacter genus 6 Phaeobacter inhibens species 2 Phaeobacter gallaeciensis species 4 Roseobacter genus 3 Roseobacter litoralis species 1 Roseobacter denitrificans species 8 Pseudovibrio genus 8 Pseudovibrio sp. FO-BEG1 species 3 Ketogulonicigenium genus 3 Ketogulonicigenium vulgare species 1139 Gammaproteobacteria class 48 Pasteurellales order 48 Pasteurellaceae family 5 Histophilus genus 5 Histophilus somni species 8 Pasteurella genus 8 Pasteurella multocida species 6 Pasteurella multocida subsp. multocida subspecies 2 Aggregatibacter genus 2 Aggregatibacter aphrophilus species 7 Actinobacillus genus 2 Actinobacillus succinogenes species 2 Actinobacillus pleuropneumoniae species 3 Actinobacillus suis species 3 Gallibacterium genus 3 Gallibacterium anatis species 23 Haemophilus genus 2 Haemophilus parainfluenzae species 1 Haemophilus ducreyi species 2 Haemophilus parasuis species 18 Haemophilus influenzae species 15 Aeromonadales order 15 Aeromonadaceae family 9 Aeromonas genus 3 Aeromonas veronii species 6 Aeromonas salmonicida species 6 Aeromonas salmonicida subsp. salmonicida subspecies 5 Tolumonas genus 5 Tolumonas auensis species 1 Oceanimonas genus 1 Oceanimonas sp. GK1 species 4 gamma proteobacterium HdN1 species 1 Cardiobacteriales order 1 Cardiobacteriaceae family 1 Dichelobacter genus 1 Dichelobacter nodosus species 7 Methylococcales order 7 Methylococcaceae family 4 Methylomonas genus 4 Methylomonas methanica species 3 Methylomicrobium genus 3 Methylomicrobium alcaliphilum species 95 Alteromonadales order 1 Colwelliaceae family 1 Colwellia genus 1 Colwellia psychrerythraea species 4 Pseudoalteromonadaceae family 4 Pseudoalteromonas genus 2 Pseudoalteromonas haloplanktis species 1 Pseudoalteromonas sp. SM9913 species 1 Pseudoalteromonas atlantica species 1 Teredinibacter genus 1 Teredinibacter turnerae species 46 Shewanellaceae family 46 Shewanella genus 21 Shewanella baltica species 3 Shewanella sp. W3-18-1 species 1 Shewanella piezotolerans species 2 Shewanella pealeana species 1 Shewanella sediminis species 2 Shewanella oneidensis species 1 Shewanella loihica species 5 Shewanella putrefaciens species 2 Shewanella sp. MR-4 species 3 Shewanella sp. ANA-3 species 1 Shewanella halifaxensis species 4 Shewanella sp. MR-7 species 3 Psychromonadaceae family 3 Psychromonas genus 3 Psychromonas ingrahamii species 2 Idiomarinaceae family 2 Idiomarina genus 2 Idiomarina loihiensis species 38 Alteromonadaceae family 11 Marinobacter genus 2 Marinobacter sp. BSs20148 species 3 Marinobacter adhaerens species 6 Marinobacter hydrocarbonoclasticus species 20 Alteromonas genus 4 Alteromonas sp. SN2 species 16 Alteromonas macleodii species 1 Saccharophagus genus 1 Saccharophagus degradans species 6 Glaciecola genus 2 Glaciecola sp. 4H-3-7+YE-5 species 4 Glaciecola nitratireducens species 47 Legionellales order 47 Legionellaceae family 47 Legionella genus 42 Legionella pneumophila species 15 Legionella pneumophila subsp. pneumophila subspecies 5 Legionella longbeachae species 25 Vibrionales order 25 Vibrionaceae family 1 Photobacterium genus 1 Photobacterium profundum species 23 Vibrio genus 1 Vibrio splendidus species 6 Vibrio vulnificus species 4 Vibrio anguillarum species 2 Vibrio furnissii species 1 Vibrio sp. Ex25 species 7 Vibrio harveyi group species group 3 Vibrio campbellii species 4 Vibrio parahaemolyticus species 1 Vibrio sp. EJY3 species 1 Vibrio cholerae species 1 Aliivibrio genus 1 Aliivibrio fischeri species 69 Xanthomonadales order 69 Xanthomonadaceae family 7 Stenotrophomonas genus 7 Stenotrophomonas maltophilia species 45 Xanthomonas genus 10 Xanthomonas euvesicatoria species 6 Xanthomonas citri group species group 6 Xanthomonas citri species 4 Xanthomonas alfalfae species 4 Xanthomonas alfalfae subsp. citrumelonis subspecies 10 Xanthomonas oryzae species 2 Xanthomonas albilineans species 13 Xanthomonas campestris species 3 Pseudoxanthomonas genus 2 Pseudoxanthomonas spadix species 1 Pseudoxanthomonas suwonensis species 12 Xylella genus 12 Xylella fastidiosa species 2 Xylella fastidiosa subsp. fastidiosa subspecies 2 Frateuria genus 2 Frateuria aurantia species 15 Thiotrichales order 5 Francisellaceae family 5 Francisella genus 1 Francisella philomiragia species 3 Francisella tularensis species 3 Francisella tularensis subsp. novicida subspecies 1 Francisella sp. TX077308 species 10 Piscirickettsiaceae family 4 Thiomicrospira genus 4 Thiomicrospira crunogena species 1 Cycloclasticus genus 1 Cycloclasticus sp. P1 species 1 Thioalkalimicrobium genus 1 Thioalkalimicrobium cyclicum species 4 Methylophaga genus 2 Methylophaga frappieri species 2 Methylophaga nitratireducenticrescens species 623 Enterobacteriales order 623 Enterobacteriaceae family 6 Edwardsiella genus 2 Edwardsiella ictaluri species 4 Edwardsiella tarda species 5 Xenorhabdus genus 3 Xenorhabdus bovienii species 2 Xenorhabdus nematophila species 8 Cronobacter genus 6 Cronobacter sakazakii species 2 Cronobacter turicensis species 30 Klebsiella genus 23 Klebsiella pneumoniae species 15 Klebsiella pneumoniae subsp. pneumoniae subspecies 7 Klebsiella oxytoca species 23 Enterobacter genus 16 Enterobacter cloacae complex species group 13 Enterobacter cloacae species 9 Enterobacter cloacae subsp. cloacae subspecies 2 Enterobacter cloacae subsp. dissolvens subspecies 3 Enterobacter lignolyticus species 5 Enterobacter sp. 638 species 2 Enterobacter aerogenes species 12 Erwinia genus 1 Erwinia tasmaniensis species 2 Erwinia billingiae species 2 Erwinia sp. Ejp617 species 4 Erwinia pyrifoliae species 3 Erwinia amylovora species 8 Sodalis genus 8 Sodalis glossinidius species 1 Shimwellia genus 1 Shimwellia blattae species 103 Salmonella genus 98 Salmonella enterica species 5 Salmonella enterica subsp. arizonae subspecies 93 Salmonella enterica subsp. enterica subspecies 5 Salmonella bongori species 21 Pectobacterium genus 5 Pectobacterium atrosepticum species 7 Pectobacterium wasabiae species 9 Pectobacterium carotovorum species 9 Pectobacterium carotovorum subsp. carotovorum subspecies 3 Providencia genus 3 Providencia stuartii species 19 Shigella genus 15 Shigella flexneri species 4 Shigella boydii species 13 Pantoea genus 3 Pantoea sp. At-9b species 2 Pantoea vagans species 8 Pantoea ananatis species 10 Serratia genus 2 Serratia plymuthica species 2 Serratia sp. AS12 species 4 Serratia proteamaculans species 2 Serratia sp. AS13 species 285 Escherichia genus 282 Escherichia coli species 3 Escherichia fergusonii species 2 Candidatus Hamiltonella genus 2 Candidatus Hamiltonella defensa species 28 Yersinia genus 11 Yersinia pseudotuberculosis species 9 Yersinia pestis species 8 Yersinia enterocolitica species 4 Yersinia enterocolitica subsp. palearctica subspecies 4 Yersinia enterocolitica subsp. enterocolitica subspecies 11 Citrobacter genus 8 Citrobacter rodentium species 3 Citrobacter koseri species 8 Rahnella genus 2 Rahnella sp. Y9602 species 6 Rahnella aquatilis species 9 Photorhabdus genus 5 Photorhabdus luminescens species 5 Photorhabdus luminescens subsp. laumondii subspecies 4 Photorhabdus asymbiotica species 15 Dickeya genus 4 Dickeya zeae species 11 Dickeya dadantii species 3 Proteus genus 3 Proteus mirabilis species 31 Chromatiales order 11 Ectothiorhodospiraceae family 3 Halorhodospira genus 3 Halorhodospira halophila species 4 Alkalilimnicola genus 4 Alkalilimnicola ehrlichii species 4 Thioalkalivibrio genus 2 Thioalkalivibrio sp. K90mix species 2 Thioalkalivibrio sulfidiphilus species 18 Chromatiaceae family 3 Allochromatium genus 3 Allochromatium vinosum species 9 Nitrosococcus genus 6 Nitrosococcus halophilus species 1 Nitrosococcus watsonii species 2 Nitrosococcus oceani species 6 Thiocystis genus 6 Thiocystis violascens species 2 Halothiobacillaceae family 2 Halothiobacillus genus 2 Halothiobacillus neapolitanus species 14 Oceanospirillales order 1 Hahellaceae family 1 Hahella genus 1 Hahella chejuensis species 7 Halomonadaceae family 1 Chromohalobacter genus 1 Chromohalobacter salexigens species 6 Halomonas genus 6 Halomonas elongata species 2 Oceanospirillaceae family 2 Marinomonas genus 1 Marinomonas sp. MWYL1 species 1 Marinomonas mediterranea species 4 Alcanivoracaceae family 4 Alcanivorax genus 2 Alcanivorax dieselolei species 2 Alcanivorax borkumensis species 17 Acidithiobacillales order 17 Acidithiobacillaceae family 17 Acidithiobacillus genus 8 Acidithiobacillus caldus species 5 Acidithiobacillus ferrivorans species 4 Acidithiobacillus ferrooxidans species 128 Pseudomonadales order 105 Pseudomonadaceae family 2 Azotobacter group subfamily 2 Azotobacter genus 2 Azotobacter vinelandii species 103 Pseudomonas genus 27 Pseudomonas stutzeri group species group 27 Pseudomonas stutzeri subgroup species subgroup 27 Pseudomonas stutzeri species 2 Pseudomonas brassicacearum species 2 Pseudomonas brassicacearum subsp. brassicacearum subspecies 10 Pseudomonas syringae group species group 5 Pseudomonas syringae group genomosp. 3 species 2 Pseudomonas syringae group genomosp. 2 species subgroup 2 Pseudomonas savastanoi species 3 Pseudomonas syringae group genomosp. 1 species subgroup 3 Pseudomonas syringae species 29 Pseudomonas aeruginosa group species group 21 Pseudomonas aeruginosa species 8 Pseudomonas mendocina species 21 Pseudomonas putida group species group 21 Pseudomonas putida species 14 Pseudomonas fluorescens group species group 10 Pseudomonas fluorescens species 4 Pseudomonas protegens species 23 Moraxellaceae family 8 Psychrobacter genus 2 Psychrobacter sp. PRwf-1 species 2 Psychrobacter arcticus species 4 Psychrobacter cryohalolentis species 2 Moraxella genus 2 Branhamella subgenus 2 Moraxella catarrhalis species 13 Acinetobacter genus 1 Acinetobacter oleivorans species 1 Acinetobacter sp. ADP1 species 11 Acinetobacter calcoaceticus/baumannii complex species group 11 Acinetobacter baumannii species 414 Betaproteobacteria class 6 Gallionellales order 6 Gallionellaceae family 6 Gallionella genus 6 Gallionella capsiferriformans species 14 Methylophilales order 14 Methylophilaceae family 7 Methylovorus genus 4 Methylovorus glucosotrophus species 3 Methylovorus sp. MP688 species 1 Methylobacillus genus 1 Methylobacillus flagellatus species 6 Methylotenera genus 1 Methylotenera mobilis species 5 Methylotenera versatilis species 317 Burkholderiales order 28 Alcaligenaceae family 5 Pusillimonas genus 5 Pusillimonas sp. T7-7 species 14 Bordetella genus 2 Bordetella pertussis species 4 Bordetella parapertussis species 2 Bordetella avium species 2 Bordetella petrii species 4 Bordetella bronchiseptica species 3 Taylorella genus 2 Taylorella equigenitalis species 1 Taylorella asinigenitalis species 3 Achromobacter genus 3 Achromobacter xylosoxidans species 3 Advenella genus 3 Advenella kashmirensis species 6 Leptothrix genus 6 Leptothrix cholodnii species 5 Methylibium genus 5 Methylibium petroleiphilum species 12 Oxalobacteraceae family 4 Collimonas genus 4 Collimonas fungivorans species 5 Herminiimonas genus 5 Herminiimonas arsenicoxydans species 1 Herbaspirillum genus 1 Herbaspirillum seropedicae species 2 Janthinobacterium genus 2 Janthinobacterium sp. Marseille species 18 Thiomonas genus 11 Thiomonas arsenitoxydans species 7 Thiomonas intermedia species 3 Rubrivivax genus 3 Rubrivivax gelatinosus species 169 Burkholderiaceae family 130 Burkholderia genus 5 Burkholderia xenovorans species 2 Burkholderia phytofirmans species 3 Burkholderia rhizoxinica species 3 Burkholderia sp. CCGE1002 species 7 Burkholderia gladioli species 36 Burkholderia cepacia complex species group 7 Burkholderia vietnamiensis species 8 Burkholderia multivorans species 1 Burkholderia cepacia species 17 Burkholderia cenocepacia species 3 Burkholderia ambifaria species 8 Burkholderia glumae species 4 Burkholderia sp. CCGE1001 species 2 Burkholderia phymatum species 5 Burkholderia sp. KJ006 species 49 pseudomallei group species group 35 Burkholderia pseudomallei species 6 Burkholderia thailandensis species 8 Burkholderia mallei species 3 Burkholderia sp. YI23 species 3 Burkholderia phenoliruptrix species 17 Cupriavidus genus 3 Cupriavidus taiwanensis species 7 Cupriavidus necator species 2 Cupriavidus pinatubonensis species 5 Cupriavidus metallidurans species 18 Ralstonia genus 8 Ralstonia solanacearum species 10 Ralstonia pickettii species 4 Polynucleobacter genus 4 Polynucleobacter necessarius species 4 Polynucleobacter necessarius subsp. asymbioticus subspecies 76 Comamonadaceae family 12 Polaromonas genus 6 Polaromonas naphthalenivorans species 6 Polaromonas sp. JS666 species 10 Variovorax genus 10 Variovorax paradoxus species 2 Verminephrobacter genus 2 Verminephrobacter eiseniae species 17 Acidovorax genus 3 Acidovorax citrulli species 5 Acidovorax sp. JS42 species 1 Acidovorax ebreus species 8 Acidovorax sp. KKS102 species 1 Ramlibacter genus 1 Ramlibacter tataouinensis species 5 Comamonas genus 5 Comamonas testosteroni species 9 Delftia genus 7 Delftia acidovorans species 2 Delftia sp. Cs1-4 species 3 Rhodoferax genus 3 Rhodoferax ferrireducens species 17 Alicycliphilus genus 17 Alicycliphilus denitrificans species 22 Rhodocyclales order 22 Rhodocyclaceae family 6 Aromatoleum genus 6 Aromatoleum aromaticum species 3 Azoarcus genus 3 Azoarcus sp. BH72 species 2 Thauera genus 2 Thauera sp. MZ1T species 8 Dechloromonas genus 8 Dechloromonas aromatica species 3 Azospira genus 3 Azospira oryzae species 24 Neisseriales order 4 Chromobacteriaceae family 3 Laribacter genus 3 Laribacter hongkongensis species 1 Pseudogulbenkiania genus 1 Pseudogulbenkiania sp. NH8B species 20 Neisseriaceae family 20 Neisseria genus 12 Neisseria meningitidis species 1 Neisseria lactamica species 7 Neisseria gonorrhoeae species 24 Nitrosomonadales order 24 Nitrosomonadaceae family 3 Nitrosospira genus 3 Nitrosospira multiformis species 21 Nitrosomonas genus 1 Nitrosomonas europaea species 6 Nitrosomonas sp. AL212 species 10 Nitrosomonas sp. Is79A3 species 4 Nitrosomonas eutropha species 7 Hydrogenophilales order 7 Hydrogenophilaceae family 7 Thiobacillus genus 7 Thiobacillus denitrificans species 21 Planctomycetes phylum 21 Planctomycetia class 21 Planctomycetales order 21 Planctomycetaceae family 6 Pirellula genus 6 Pirellula staleyi species 2 Rhodopirellula genus 2 Rhodopirellula baltica species 13 Planctomyces genus 6 Planctomyces brasiliensis species 7 Planctomyces limnophilus species 20 Spirochaetes phylum 20 Spirochaetia class 20 Spirochaetales order 20 Spirochaetaceae family 9 Treponema genus 2 Treponema primitia species 2 Treponema brennaborense species 5 Treponema azotonutricium species 5 Spirochaeta genus 1 Spirochaeta africana species 4 Spirochaeta smaragdinae species 6 Sphaerochaeta genus 2 Sphaerochaeta pleomorpha species 3 Sphaerochaeta globosa species 1 Sphaerochaeta coccoides species 3 Synergistetes phylum 3 Synergistia class 3 Synergistales order 3 Synergistaceae family 1 Anaerobaculum genus 1 Anaerobaculum mobile species 2 Aminobacterium genus 2 Aminobacterium colombiense species 422 Firmicutes phylum 140 Clostridia class 28 Thermoanaerobacterales order 3 Thermoanaerobacterales Family IV. Incertae Sedis family 3 Mahella genus 3 Mahella australiensis species 9 Thermoanaerobacteraceae family 1 Thermoanaerobacter genus 1 Thermoanaerobacter mathranii species 1 Thermoanaerobacter mathranii subsp. mathranii subspecies 3 Moorella genus 3 Moorella thermoacetica species 3 Ammonifex genus 3 Ammonifex degensii species 2 Carboxydothermus genus 2 Carboxydothermus hydrogenoformans species 16 Thermoanaerobacterales Family III. Incertae Sedis family 2 Thermoanaerobacterium genus 1 Thermoanaerobacterium xylanolyticum species 1 Thermoanaerobacterium saccharolyticum species 14 Caldicellulosiruptor genus 1 Caldicellulosiruptor saccharolyticus species 2 Caldicellulosiruptor kristjanssonii species 2 Caldicellulosiruptor hydrothermalis species 3 Caldicellulosiruptor lactoaceticus species 2 Caldicellulosiruptor kronotskyensis species 3 Caldicellulosiruptor owensensis species 1 Caldicellulosiruptor bescii species 3 Halanaerobiales order 3 Halanaerobiaceae family 1 Halothermothrix genus 1 Halothermothrix orenii species 2 Halanaerobium genus 2 Halanaerobium hydrogeniformans species 109 Clostridiales order 16 Ruminococcaceae family 3 Ruminiclostridium genus 2 Ruminiclostridium thermocellum species 1 [Clostridium] clariflavum species 4 Ethanoligenens genus 4 Ethanoligenens harbinense species 9 Ruminococcus genus 9 Ruminococcus albus species 1 Clostridiales Family XI. Incertae Sedis family 1 Anaerococcus genus 1 Anaerococcus prevotii species 5 Peptostreptococcaceae family 5 Peptoclostridium genus 5 Peptoclostridium difficile species 5 Eubacteriaceae family 2 Eubacterium genus 1 Eubacterium rectale species 1 Eubacterium limosum species 3 Acetobacterium genus 3 Acetobacterium woodii species 27 Clostridiaceae family 25 Clostridium genus 3 Clostridium acetobutylicum species 3 Clostridium ljungdahlii species 3 Clostridium botulinum species 2 Clostridium sp. SY8519 species 4 Clostridium sp. BNL1100 species 3 Clostridium beijerinckii species 2 Clostridium kluyveri species 2 Clostridium cellulovorans species 1 Clostridium novyi species 2 [Clostridium] cellulolyticum species 2 Alkaliphilus genus 1 Alkaliphilus oremlandii species 1 Alkaliphilus metalliredigens species 2 Syntrophomonadaceae family 1 Syntrophomonas genus 1 Syntrophomonas wolfei species 1 Syntrophomonas wolfei subsp. wolfei subspecies 1 Syntrophothermus genus 1 Syntrophothermus lipocalidus species 13 Lachnospiraceae family 2 Butyrivibrio genus 2 Butyrivibrio proteoclasticus species 7 Lachnoclostridium genus 2 Lachnoclostridium phytofermentans species 5 [Clostridium] saccharolyticum species 4 Cellulosilyticum genus 4 Cellulosilyticum lentocellum species 7 Oscillospiraceae family 7 Oscillibacter genus 7 Oscillibacter valericigenes species 6 Clostridiales Family XVII. Incertae Sedis family 5 Sulfobacillus genus 5 Sulfobacillus acidophilus species 1 Thermaerobacter genus 1 Thermaerobacter marianensis species 27 Peptococcaceae family 2 Desulfosporosinus genus 2 Desulfosporosinus acidiphilus species 3 Desulfitobacterium genus 2 Desulfitobacterium hafniense species 1 Desulfitobacterium dehalogenans species 17 Desulfotomaculum genus 5 Desulfotomaculum reducens species 1 Desulfotomaculum carboxydivorans species 4 Desulfotomaculum kuznetsovii species 1 Desulfotomaculum ruminis species 6 Desulfotomaculum acetoxidans species 2 Pelotomaculum genus 2 Pelotomaculum thermopropionicum species 3 Dehalobacter genus 2 Dehalobacter sp. DCA species 1 Dehalobacter sp. CF species 274 Bacilli class 178 Lactobacillales order 5 Leuconostocaceae family 4 Leuconostoc genus 1 Leuconostoc kimchii species 1 Leuconostoc sp. C2 species 1 Leuconostoc gasicomitatum species 1 Leuconostoc citreum species 1 Weissella genus 1 Weissella koreensis species 1 Carnobacteriaceae family 1 Carnobacterium genus 1 Carnobacterium sp. 17-4 species 105 Streptococcaceae family 81 Streptococcus genus 3 Streptococcus mutans species 1 Streptococcus anginosus group species group 1 Streptococcus intermedius species 1 Streptococcus salivarius species 7 Streptococcus thermophilus species 3 Streptococcus infantarius species 3 Streptococcus infantarius subsp. infantarius subspecies 1 Streptococcus parasanguinis species 1 Streptococcus mitis species 1 Streptococcus macedonicus species 2 Streptococcus parauberis species 1 Streptococcus gallolyticus species 1 Streptococcus gallolyticus subsp. gallolyticus subspecies 9 Streptococcus pneumoniae species 14 Streptococcus pyogenes species 1 Streptococcus sanguinis species 5 Streptococcus dysgalactiae group species group 3 Streptococcus dysgalactiae species 3 Streptococcus dysgalactiae subsp. equisimilis subspecies 2 Streptococcus equi species 1 Streptococcus equi subsp. zooepidemicus subspecies 1 Streptococcus equi subsp. equi subspecies 16 Streptococcus agalactiae species 1 Streptococcus gordonii species 14 Streptococcus suis species 24 Lactococcus genus 20 Lactococcus lactis species 10 Lactococcus lactis subsp. cremoris subspecies 10 Lactococcus lactis subsp. lactis subspecies 4 Lactococcus garvieae species 7 Enterococcaceae family 5 Enterococcus genus 1 Enterococcus faecium species 3 Enterococcus faecalis species 1 Enterococcus hirae species 2 Tetragenococcus genus 2 Tetragenococcus halophilus species 60 Lactobacillaceae family 57 Lactobacillus genus 2 Lactobacillus salivarius species 3 Lactobacillus acidophilus species 5 Lactobacillus johnsonii species 1 Lactobacillus ruminis species 9 Lactobacillus plantarum species 3 Lactobacillus plantarum subsp. plantarum subspecies 1 Lactobacillus kefiranofaciens species 4 Lactobacillus fermentum species 1 Lactobacillus gasseri species 5 Lactobacillus rhamnosus species 3 Lactobacillus amylovorus species 18 Lactobacillus casei group species group 18 Lactobacillus casei species 1 Lactobacillus reuteri species 3 Lactobacillus buchneri species 1 Lactobacillus sakei species 1 Lactobacillus sakei subsp. sakei subspecies 3 Pediococcus genus 1 Pediococcus claussenii species 2 Pediococcus pentosaceus species 96 Bacillales order 14 Staphylococcaceae family 1 Macrococcus genus 1 Macrococcus caseolyticus species 13 Staphylococcus genus 2 Staphylococcus epidermidis species 5 Staphylococcus aureus species 4 Staphylococcus aureus subsp. aureus subspecies 2 Staphylococcus saprophyticus species 2 Staphylococcus saprophyticus subsp. saprophyticus subspecies 1 Staphylococcus pseudintermedius species 3 Staphylococcus haemolyticus species 1 Exiguobacterium genus 1 Exiguobacterium antarcticum species 2 Planococcaceae family 2 Solibacillus genus 2 Solibacillus silvestris species 9 Paenibacillaceae family 9 Paenibacillus genus 1 Paenibacillus sp. Y412MC10 species 8 Paenibacillus polymyxa species 4 Alicyclobacillaceae family 2 Alicyclobacillus genus 2 Alicyclobacillus acidocaldarius species 2 Alicyclobacillus acidocaldarius subsp. acidocaldarius subspecies 2 Kyrpidia genus 2 Kyrpidia tusciae species 46 Bacillaceae family 1 Amphibacillus genus 1 Amphibacillus xylanus species 1 Anoxybacillus genus 1 Anoxybacillus flavithermus species 9 Geobacillus genus 2 Geobacillus sp. WCH70 species 1 Geobacillus sp. Y4.1MC1 species 1 Geobacillus thermoglucosidasius species 1 Geobacillus sp. C56-T3 species 3 Geobacillus thermodenitrificans species 1 Geobacillus kaustophilus species 1 Lysinibacillus genus 1 Lysinibacillus sphaericus species 34 Bacillus genus 1 Bacillus halodurans species 9 Bacillus cereus group species group 2 Bacillus cereus species 7 Bacillus thuringiensis species 1 Bacillus cellulosilyticus species 17 Bacillus subtilis group species group 10 Bacillus amyloliquefaciens species 2 Bacillus amyloliquefaciens subsp. amyloliquefaciens subspecies 3 Bacillus amyloliquefaciens subsp. plantarum subspecies 2 Bacillus licheniformis species 5 Bacillus subtilis species 3 Bacillus subtilis subsp. spizizenii subspecies 2 Bacillus subtilis subsp. subtilis subspecies 1 Bacillus clausii species 3 Bacillus megaterium species 1 Bacillus sp. JS species 1 Bacillus pseudofirmus species 20 Listeriaceae family 20 Listeria genus 1 Listeria welshimeri species 2 Listeria seeligeri species 15 Listeria monocytogenes species 2 Listeria innocua species 7 Negativicutes class 7 Selenomonadales order 3 Acidaminococcaceae family 3 Acidaminococcus genus 1 Acidaminococcus fermentans species 2 Acidaminococcus intestini species 4 Veillonellaceae family 1 Veillonella genus 1 Veillonella parvula species 1 Selenomonas genus 1 Selenomonas sputigena species 2 Megasphaera genus 2 Megasphaera elsdenii species 1 Erysipelotrichia class 1 Erysipelotrichales order 1 Erysipelotrichaceae family 1 Erysipelothrix genus 1 Erysipelothrix rhusiopathiae species 10 Chloroflexi phylum 3 Chloroflexia class 1 Herpetosiphonales order 1 Herpetosiphonaceae family 1 Herpetosiphon genus 1 Herpetosiphon aurantiacus species 2 Chloroflexales order 1 Roseiflexineae suborder 1 Roseiflexaceae family 1 Roseiflexus genus 1 Roseiflexus castenholzii species 1 Chloroflexineae suborder 1 Chloroflexaceae family 1 Chloroflexus genus 1 Chloroflexus aggregans species 5 Dehalococcoidia class 5 Dehalococcoidales order 5 Dehalococcoidaceae family 5 Dehalococcoides genus 5 Dehalococcoides mccartyi species 1 Anaerolineae class 1 Anaerolineales order 1 Anaerolineaceae family 1 Anaerolinea genus 1 Anaerolinea thermophila species 1 Thermomicrobia class 1 Sphaerobacteridae subclass 1 Sphaerobacterales order 1 Sphaerobacterineae suborder 1 Sphaerobacteraceae family 1 Sphaerobacter genus 1 Sphaerobacter thermophilus species 1 Candidatus Methylomirabilis genus 1 Candidatus Methylomirabilis oxyfera species 2 Thermodesulfobacteria phylum 2 Thermodesulfobacteria class 2 Thermodesulfobacteriales order 2 Thermodesulfobacteriaceae family 2 Thermodesulfatator genus 2 Thermodesulfatator indicus species 36 Fibrobacteres/Acidobacteria group superphylum 36 Acidobacteria phylum 2 Candidatus Chloracidobacterium genus 2 Candidatus Chloracidobacterium thermophilum species 26 Acidobacteriia class 26 Acidobacteriales order 26 Acidobacteriaceae family 3 Acidobacterium genus 3 Acidobacterium capsulatum species 16 Granulicella genus 8 Granulicella mallensis species 8 Granulicella tundricola species 7 Terriglobus genus 5 Terriglobus saanensis species 2 Terriglobus roseus species 5 Solibacteres class 5 Solibacterales order 5 Solibacteraceae family 5 Candidatus Solibacter genus 5 Candidatus Solibacter usitatus species 3 Candidatus Koribacter genus 3 Candidatus Koribacter versatilis species 166 Bacteroidetes/Chlorobi group superphylum 163 Bacteroidetes phylum 13 Sphingobacteriia class 13 Sphingobacteriales order 7 Sphingobacteriaceae family 1 Pedobacter genus 1 Pedobacter saltans species 3 Solitalea genus 3 Solitalea canadensis species 3 Sphingobacterium genus 3 Sphingobacterium sp. 21 species 4 Niastella genus 4 Niastella koreensis species 2 Saprospiraceae family 2 Haliscomenobacter genus 2 Haliscomenobacter hydrossis species 6 Bacteroidetes Order II. Incertae sedis order 6 Rhodothermaceae family 3 Salinibacter genus 3 Salinibacter ruber species 3 Rhodothermus genus 3 Rhodothermus marinus species 74 Bacteroidia class 74 Bacteroidales order 10 Rikenellaceae family 10 Alistipes genus 10 Alistipes finegoldii species 17 Porphyromonadaceae family 1 Tannerella genus 1 Tannerella forsythia species 4 Porphyromonas genus 4 Porphyromonas gingivalis species 3 Paludibacter genus 3 Paludibacter propionicigenes species 6 Parabacteroides genus 6 Parabacteroides distasonis species 3 Odoribacter genus 3 Odoribacter splanchnicus species 41 Bacteroidaceae family 41 Bacteroides genus 7 Bacteroides helcogenes species 8 Bacteroides salanitronis species 15 Bacteroides fragilis species 5 Bacteroides thetaiotaomicron species 6 Bacteroides vulgatus species 6 Prevotellaceae family 6 Prevotella genus 2 Prevotella denticola species 2 Prevotella melaninogenica species 1 Prevotella intermedia species 1 Prevotella ruminicola species 38 Flavobacteriia class 38 Flavobacteriales order 29 Flavobacteriaceae family 3 Croceibacter genus 3 Croceibacter atlanticus species 5 Zunongwangia genus 5 Zunongwangia profunda species 2 Aequorivita genus 2 Aequorivita sublithincola species 2 Riemerella genus 2 Riemerella anatipestifer species 1 Cellulophaga genus 1 Cellulophaga lytica species 5 Robiginitalea genus 5 Robiginitalea biformata species 10 Flavobacterium genus 4 Flavobacterium psychrophilum species 2 Flavobacterium columnare species 4 Flavobacterium indicum species 1 Weeksella genus 1 Weeksella virosa species 9 Cryomorphaceae family 6 Fluviicola genus 6 Fluviicola taffensis species 3 Owenweeksia genus 3 Owenweeksia hongkongensis species 32 Cytophagia class 32 Cytophagales order 8 Cyclobacteriaceae family 4 Cyclobacterium genus 4 Cyclobacterium marinum species 4 Belliella genus 4 Belliella baltica species 20 Cytophagaceae family 5 Runella genus 5 Runella slithyformis species 7 Dyadobacter genus 7 Dyadobacter fermentans species 2 Emticicia genus 2 Emticicia oligotrophica species 5 Spirosoma genus 5 Spirosoma linguale species 1 Cytophaga genus 1 Cytophaga hutchinsonii species 4 Flammeovirgaceae family 4 Marivirga genus 4 Marivirga tractuosa species 3 Chlorobi phylum 3 Chlorobia class 3 Chlorobiales order 3 Chlorobiaceae family 3 Chlorobium genus 1 Chlorobium limicola species 2 Chlorobium phaeobacteroides species 34 Deinococcus-Thermus phylum 34 Deinococci class 23 Thermales order 23 Thermaceae family 6 Meiothermus genus 2 Meiothermus ruber species 4 Meiothermus silvanus species 15 Thermus genus 6 Thermus thermophilus species 5 Thermus oshimai species 3 Thermus scotoductus species 1 Thermus sp. CCB_US3_UF1 species 2 Oceanithermus genus 2 Oceanithermus profundus species 11 Deinococcales order 11 Deinococcaceae family 11 Deinococcus genus 1 Deinococcus geothermalis species 1 Deinococcus radiodurans species 2 Deinococcus gobiensis species 1 Deinococcus proteolyticus species 5 Deinococcus deserti species 1 Deinococcus maricopensis species 126 Archaea superkingdom 4 Thaumarchaeota phylum 2 Nitrososphaerales order 2 Nitrososphaeraceae family 2 Nitrososphaera genus 2 Candidatus Nitrososphaera gargensis species 2 Nitrosopumilales order 2 Nitrosopumilaceae family 2 Nitrosopumilus genus 1 Candidatus Nitrosopumilus sp. AR2 species 1 Candidatus Nitrosopumilus koreensis species 21 Crenarchaeota phylum 21 Thermoprotei class 18 Sulfolobales order 18 Sulfolobaceae family 1 Metallosphaera genus 1 Metallosphaera sedula species 1 Acidianus genus 1 Acidianus hospitalis species 16 Sulfolobus genus 10 Sulfolobus islandicus species 2 Sulfolobus tokodaii species 2 Sulfolobus solfataricus species 2 Sulfolobus acidocaldarius species 1 Thermoproteales order 1 Thermoproteaceae family 1 Vulcanisaeta genus 1 Vulcanisaeta distributa species 2 Desulfurococcales order 2 Desulfurococcaceae family 1 Aeropyrum genus 1 Aeropyrum pernix species 1 Staphylothermus genus 1 Staphylothermus hellenicus species 101 Euryarchaeota phylum 21 Methanomicrobia class 4 Methanomicrobiales order 1 Methanospirillaceae family 1 Methanospirillum genus 1 Methanospirillum hungatei species 3 Methanomicrobiaceae family 1 Methanoculleus genus 1 Methanoculleus bourgensis species 2 Methanoplanus genus 2 Methanoplanus petrolearius species 5 Methanocellales order 5 Methanocellaceae family 5 Methanocella genus 2 Methanocella paludicola species 3 Methanocella arvoryzae species 12 Methanosarcinales order 2 Methanosaetaceae family 2 Methanosaeta genus 1 Methanosaeta concilii species 1 Methanosaeta harundinacea species 10 Methanosarcinaceae family 5 Methanosarcina genus 3 Methanosarcina barkeri species 1 Methanosarcina acetivorans species 1 Methanosarcina mazei species 2 Methanococcoides genus 2 Methanococcoides burtonii species 1 Methanolobus genus 1 Methanolobus psychrophilus species 2 Methanosalsum genus 2 Methanosalsum zhilinae species 1 Methanobacteria class 1 Methanobacteriales order 1 Methanobacteriaceae family 1 Methanothermobacter genus 1 Methanothermobacter marburgensis species 3 Archaeoglobi class 3 Archaeoglobales order 3 Archaeoglobaceae family 3 Archaeoglobus genus 2 Archaeoglobus profundus species 1 Archaeoglobus fulgidus species 7 Thermococci class 7 Thermococcales order 7 Thermococcaceae family 6 Thermococcus genus 2 Thermococcus onnurineus species 1 Thermococcus barophilus species 1 Thermococcus kodakarensis species 1 Thermococcus sp. CL1 species 1 Thermococcus sp. 4557 species 1 Pyrococcus genus 1 Pyrococcus yayanosii species 1 Thermoplasmata class 1 Thermoplasmatales order 1 Picrophilaceae family 1 Picrophilus genus 1 Picrophilus torridus species 59 Halobacteria class 59 Halobacteriales order 59 Halobacteriaceae family 6 Natrinema genus 6 Natrinema sp. J7-2 species 6 Halomicrobium genus 6 Halomicrobium mukohataei species 6 Natrialba genus 6 Natrialba magadii species 9 Haloferax genus 3 Haloferax mediterranei species 6 Haloferax volcanii species 4 Natronomonas genus 4 Natronomonas pharaonis species 4 Haloquadratum genus 4 Haloquadratum walsbyi species 3 Halobacterium genus 3 Halobacterium salinarum species 2 Halogeometricum genus 2 Halogeometricum borinquense species 2 Haloterrigena genus 2 Haloterrigena turkmenica species 4 Halopiger genus 4 Halopiger xanaduensis species 8 Haloarcula genus 6 Haloarcula marismortui species 2 Haloarcula hispanica species 2 Halorubrum genus 2 Halorubrum lacusprofundi species 3 Halorhabdus genus 3 Halorhabdus utahensis species 7 Methanococci class 7 Methanococcales order 5 Methanococcaceae family 5 Methanococcus genus 1 Methanococcus voltae species 4 Methanococcus maripaludis species 2 Methanocaldococcaceae family 2 Methanotorris genus 2 Methanotorris igneus species 2 Aciduliprofundum genus 2 Aciduliprofundum boonei species